Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0258
(599 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL669830-7|CAI18007.2| 507|Homo sapiens diffuse panbronchioliti... 31 3.1
AL662854-16|CAI17438.2| 507|Homo sapiens diffuse panbronchiolit... 31 3.1
AL450992-1|CAI12160.1| 249|Homo sapiens novel protein protein. 31 3.1
AL450998-13|CAH70861.1| 373|Homo sapiens SMART/HDAC1 associated... 30 5.4
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 30 5.4
AL034555-5|CAI19527.1| 373|Homo sapiens SMART/HDAC1 associated ... 30 5.4
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 30 5.4
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 30 5.4
>AL669830-7|CAI18007.2| 507|Homo sapiens diffuse panbronchiolitis
critical region 1 protein.
Length = 507
Score = 31.1 bits (67), Expect = 3.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -2
Query: 523 ERSTNPGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQT--AVSRLLRKPSDASESG 350
ER N + P +H +T+N TPS S P +G++T A P++++E G
Sbjct: 61 ERIANEKATPSPAKPTEHGETTVNEDTTPS-SAEPTENGERTPLANENTTTSPTESTEHG 119
>AL662854-16|CAI17438.2| 507|Homo sapiens diffuse panbronchiolitis
critical region 1 protein.
Length = 507
Score = 31.1 bits (67), Expect = 3.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -2
Query: 523 ERSTNPGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQT--AVSRLLRKPSDASESG 350
ER N + P +H +T+N TPS S P +G++T A P++++E G
Sbjct: 61 ERIANEKATPSPAKPTEHGETTVNEDTTPS-SAEPTENGERTPLANENTTTSPTESTEHG 119
>AL450992-1|CAI12160.1| 249|Homo sapiens novel protein protein.
Length = 249
Score = 31.1 bits (67), Expect = 3.1
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 337 ASPACRTPTRPTACAVDETPRSA-VPTAPASC 429
ASPAC P AC + P S +P PASC
Sbjct: 196 ASPACLLPPASPACLLPPLPASCLLPPLPASC 227
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 337 ASPACRTPTRPTACAV-DETPRSAVPTAPASC 429
ASPAC P AC + +P +P PASC
Sbjct: 187 ASPACLLPPASPACLLPPASPACLLPPLPASC 218
>AL450998-13|CAH70861.1| 373|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 373
Score = 30.3 bits (65), Expect = 5.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -2
Query: 586 VYRGSV*ADSTWHQMEWVFYFERSTNPGRSRIPVLKDQHTNSTLNRQ-RTPSGSTTPVRS 410
+YR + + + E + RS +P S+ Q S +R R+PSGS + RS
Sbjct: 178 IYRDDITREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRS 237
Query: 409 GQQTAVSRLLRKPSDASES 353
++S SD+S+S
Sbjct: 238 SSSDSISSSSSTSSDSSDS 256
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.3 bits (65), Expect = 5.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -2
Query: 586 VYRGSV*ADSTWHQMEWVFYFERSTNPGRSRIPVLKDQHTNSTLNRQ-RTPSGSTTPVRS 410
+YR + + + E + RS +P S+ Q S +R R+PSGS + RS
Sbjct: 219 IYRDDITREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRS 278
Query: 409 GQQTAVSRLLRKPSDASES 353
++S SD+S+S
Sbjct: 279 SSSDSISSSSSTSSDSSDS 297
>AL034555-5|CAI19527.1| 373|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 373
Score = 30.3 bits (65), Expect = 5.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -2
Query: 586 VYRGSV*ADSTWHQMEWVFYFERSTNPGRSRIPVLKDQHTNSTLNRQ-RTPSGSTTPVRS 410
+YR + + + E + RS +P S+ Q S +R R+PSGS + RS
Sbjct: 178 IYRDDITREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRS 237
Query: 409 GQQTAVSRLLRKPSDASES 353
++S SD+S+S
Sbjct: 238 SSSDSISSSSSTSSDSSDS 256
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.3 bits (65), Expect = 5.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -2
Query: 586 VYRGSV*ADSTWHQMEWVFYFERSTNPGRSRIPVLKDQHTNSTLNRQ-RTPSGSTTPVRS 410
+YR + + + E + RS +P S+ Q S +R R+PSGS + RS
Sbjct: 219 IYRDDITREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRS 278
Query: 409 GQQTAVSRLLRKPSDASES 353
++S SD+S+S
Sbjct: 279 SSSDSISSSSSTSSDSSDS 297
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 30.3 bits (65), Expect = 5.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -2
Query: 586 VYRGSV*ADSTWHQMEWVFYFERSTNPGRSRIPVLKDQHTNSTLNRQ-RTPSGSTTPVRS 410
+YR + + + E + RS +P S+ Q S +R R+PSGS + RS
Sbjct: 219 IYRDDITREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRS 278
Query: 409 GQQTAVSRLLRKPSDASES 353
++S SD+S+S
Sbjct: 279 SSSDSISSSSSTSSDSSDS 297
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,723,099
Number of Sequences: 237096
Number of extensions: 1345660
Number of successful extensions: 3995
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3995
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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