Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0258
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 29 1.9
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z48638-6|CAA88567.1| 541|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 28 5.9
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 28 5.9
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 27 7.7
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -2
Query: 508 PGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDAS 359
P S PV T R PS STTPV++ TA +P +S
Sbjct: 342 PSSSTTPVQTTTTTAPETTRTEPPSSSTTPVQNTTTTAPETTSTEPPSSS 391
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 478 DQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDAS 359
D T STL TP+ S+TP++ TA +P +S
Sbjct: 53 DMETPSTLVLSSTPTSSSTPIKETTTTAPETTSTEPPSSS 92
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -2
Query: 508 PGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 353
P S PV T PS STTPV++ TA +P +S S
Sbjct: 89 PSSSTTPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTS 140
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -2
Query: 520 RSTNPGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDAS 359
R+ P S PV T PS STTPV++ TA +P +S
Sbjct: 361 RTEPPSSSTTPVQNTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSS 414
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -2
Query: 508 PGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 353
P S PV T PS STTPV++ TA +P +S S
Sbjct: 135 PSSSTSPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTS 186
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 508 PGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDAS 359
P S PV T +PS STTPV++ TA +P +S
Sbjct: 227 PSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPETTSTEPPSSS 276
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 508 PGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDAS 359
P S PV T +PS STTPV++ TA +P +S
Sbjct: 503 PSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPETTSTEPPSSS 552
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = -2
Query: 511 NPGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDAS 359
+P S PV T PS STTPV++ TA +P +S
Sbjct: 249 SPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSS 299
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = -2
Query: 511 NPGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDAS 359
+P S PV T PS STTPV++ TA +P +S
Sbjct: 525 SPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSS 575
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = -2
Query: 508 PGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 353
P S PV T PS STTPV++ TA +P +S +
Sbjct: 641 PSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNT 692
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -2
Query: 526 FERSTNPGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPSDAS 359
+ R+ +P RSR + + + S L R R+ +P RS + + L R S S
Sbjct: 250 YSRNGSPDRSRRQIPNEHNRPSNLRRSRSAERRRSPTRSYRGASPRNLARSNSGLS 305
>Z48638-6|CAA88567.1| 541|Caenorhabditis elegans Hypothetical
protein ZK892.3 protein.
Length = 541
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -2
Query: 532 FYFERSTNP-----GRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRKPS 368
FY E S N G+ P +D+H+ + LN S + V S +A++ +
Sbjct: 467 FYLEESRNVNLQHVGQDEEPSAEDEHSKAMLNDSGEKSADDSGVASTDNSALATSTDRRD 526
Query: 367 DASES 353
+ASE+
Sbjct: 527 EASET 531
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = -2
Query: 583 YRGSV*ADSTWHQMEWVFYFERSTNPGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQ 404
Y+ ++S W + + + G + P + ++ST ++ +P TP SG
Sbjct: 533 YQNGQSSNSWWSGNDGQTRQRKQQHNGYNNRPTVSSSSSSSTSSKYFSPDAVETPTNSGS 592
Query: 403 QTAVSRLLRKP 371
T +R P
Sbjct: 593 STPPQTSVRNP 603
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = -2
Query: 583 YRGSV*ADSTWHQMEWVFYFERSTNPGRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQ 404
Y+ ++S W + + + G + P + ++ST ++ +P TP SG
Sbjct: 435 YQNGQSSNSWWSGNDGQTRQRKQQHNGYNNRPTVSSSSSSSTSSKYFSPDAVETPTNSGS 494
Query: 403 QTAVSRLLRKP 371
T +R P
Sbjct: 495 STPPQTSVRNP 505
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 469 TNSTLNRQRTPSGSTTPVRSGQQTAVS 389
T ST+ + TPSG+T + SG TA +
Sbjct: 509 TESTVLQSSTPSGTTVTLPSGSSTATA 535
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,535,369
Number of Sequences: 27780
Number of extensions: 213030
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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