Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0258
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.3  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   2.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 277 IGMVRVSLWFWAW 315
           + ++ +SLWF AW
Sbjct: 279 VALMTISLWFMAW 291


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 277 IGMVRVSLWFWAW 315
           + ++ +SLWF AW
Sbjct: 29  VALMTISLWFMAW 41


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 88  LLLCRCQPLCSRTKPINIKLISV 156
           ++LC    L   TKPI+++  SV
Sbjct: 503 IILCEAPALRDNTKPIDMEYSSV 525


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 133 LALCENRAAGIGIATSADYDIFVLKL 56
           +A+ E      G+A  A YD  VLKL
Sbjct: 311 IAIKEKLVKDSGVAKDAAYDNIVLKL 336


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 268  NVNKHSSTHATEK*QMTDLI 209
            NVNKH + H T+  +  D I
Sbjct: 1682 NVNKHCTIHRTQVKETDDKI 1701


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,872
Number of Sequences: 438
Number of extensions: 2749
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)