Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0258
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48240.1 68418.m05960 hypothetical protein                          32   0.33 
At3g51630.1 68416.m05662 protein kinase family protein contains ...    28   5.4  
At3g54920.1 68416.m06086 pectate lyase, putative / powdery milde...    27   7.2  

>At5g48240.1 68418.m05960 hypothetical protein 
          Length = 339

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = -1

Query: 437 IGQHDAGAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQ 258
           +  H+   +G A +GV     AV +   +HA     P R + A+  ++ R    ++E  +
Sbjct: 195 LDSHEKILIGVATKGVVKLFNAVNKA--QHAQKGLNPSRSKDAKVLKKRRKEAFLSELGK 252

Query: 257 TLIDTRD*EMTDDRSNL 207
           T  DT+   + + RS L
Sbjct: 253 TKTDTKPSTLDEHRSKL 269


>At3g51630.1 68416.m05662 protein kinase family protein contains
           Pfam profile: PF00069 protein kinase domain
          Length = 549

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 308 QNHRETRTIPIVNERKQTLIDTRD*EMTDDRSNLCNASRFDAFEPLTKKLQ 156
           QN ++ R + +  ++ ++L+DTR   +      L N  R   F+P T +LQ
Sbjct: 488 QNQQQRRRVRL-QQKMRSLVDTRTQVLHRSLMELINKRRGRGFDPNTNELQ 537


>At3g54920.1 68416.m06086 pectate lyase, putative / powdery mildew
           susceptibility protein (PMR6) identical to powdery
           mildew susceptibility protein [Arabidopsis thaliana]
           GI:22506901; similar to pectate lyase 2 GP:6606534 from
           [Musa acuminata]
          Length = 501

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 58  ILIQIYHNRHLLLCRCQPLCSRTKPINIKL 147
           +L+Q + N   LLC    L S TKP+N+ L
Sbjct: 1   MLLQNFSNTIFLLCLFFTLLSATKPLNLTL 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,829,316
Number of Sequences: 28952
Number of extensions: 191794
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)