Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0257
         (632 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   1.6  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   1.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   3.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.6  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 272 KLSKAQFFVGVTSFGAYVYLYFYTIYTFILLMPNK--*YYKEEKIL 141
           KLSK + F+ +T+  + V L F   + F+ ++P K   +YK   IL
Sbjct: 37  KLSKIRSFLNITA--SAVLLPFAIYHIFMHIVPTKLISFYKSTAIL 80


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 224 YVYLYFYTIYTFILLMPNK*YYKEEKILFFLVWY*IGLPETYRSRF*KISFHLVG 60
           YV  +F    + I   P K Y K   +L FL++    +   Y  R+  ++ HL G
Sbjct: 11  YVAKFFAITPSSIYDKPTKLYQKLYPVLMFLIYTITEIYSVYERRY--MNAHLSG 63


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 424  GEKAMTFYLDTSGQRTKLQYLQTSS 350
            GE    FYLD + QR   Q   TSS
Sbjct: 1382 GENKPIFYLDEAFQRRVTQIGSTSS 1406


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 424  GEKAMTFYLDTSGQRTKLQYLQTSS 350
            GE    FYLD + QR   Q   TSS
Sbjct: 1382 GENKPIFYLDEAFQRRVTQIGSTSS 1406


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 135 KKQNLFLFIILFIRHKKYK 191
           KK  LF+ II F R+  YK
Sbjct: 2   KKITLFMIIICFERNLSYK 20


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 30  VQPSRKGGGFPNQVEGNFSKSGSIGF 107
           + P RK    P     + +KSGS GF
Sbjct: 60  LDPGRKSPSSPRISSPSSTKSGSPGF 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,437
Number of Sequences: 336
Number of extensions: 2974
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)