Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0257
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...    27   2.3  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   5.2  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    25   6.9  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   9.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   9.1  

>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 203 YRS-IDKRKHQMTSRLRKTVLSTTLL*NFFKD-SCLLFYITNTKT 331
           YR  +DKRKHQ +   ++T   T L     +  SC+   + NTKT
Sbjct: 241 YREELDKRKHQQSDETKQTKRPTVLACAVGQVLSCMHTVLVNTKT 285


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 260 AQFFVGVTSFGAYVYLYFYTIYTFILLMPNK 168
           AQ   G+ S   Y+ +YFY +YT  +++ ++
Sbjct: 284 AQNREGIASLPGYIAIYFYGMYTGSVVLADR 314


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 135 KKQNLFLFIILFIRHKKYKSINSIEV*INVSTK*RH 242
           K QN  LFI   +  +KY SI+ ++  +  + K +H
Sbjct: 273 KIQNQLLFIRNLLHERKYVSIDELDAILEENEKNKH 308


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
 Frame = -3

Query: 420 KKR*PFILIRLVKE-QNY--NICK----LQAILYIKLVFVF----VM*NNKQLSLKKFQS 274
           KK   ++ IR+ +   NY   IC     L  ILY+ +  +     V  +   L L++ +S
Sbjct: 13  KKSNSYLAIRMTRSGYNYFKGICVCTFLLSTILYLGIAVIMSHLCVFDDTAMLYLRQNRS 72

Query: 273 KVVESTVFRRRDVIW 229
           ++ ES +FR   + W
Sbjct: 73  RLAESNIFRTLFISW 87


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 361 ANIVILFFDQTYQDKRSSLFPHFNQNY 441
           AN+V   FD++++ +R+ L   F+ N+
Sbjct: 89  ANVVKQMFDESFERRRNLLMKGFSMNH 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,084
Number of Sequences: 5004
Number of extensions: 46415
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)