Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0257
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0155 - 1778644-1780059                                           31   1.0  
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937     28   7.1  
05_01_0187 + 1349725-1352238                                           28   7.1  
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701...    27   9.4  

>04_01_0155 - 1778644-1780059
          Length = 471

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 403 YLDTSGQRTKLQYLQTSSYIIY*TCFCICNV 311
           Y + +G++TKL+ L+ +  ++Y   FC C++
Sbjct: 384 YQEQAGRKTKLELLEKARVLVYFWAFCCCSL 414


>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
          Length = 853

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 114 APGNLSIPILKNFLPPGWESRHLSGKV 34
           APGNL+  +  N+LP G + R ++ +V
Sbjct: 693 APGNLAYSVTNNYLPEGNKHRTMATRV 719


>05_01_0187 + 1349725-1352238
          Length = 837

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 114 APGNLSIPILKNFLPPGWESRHLSGKV 34
           APGNL+  +  N+LP G + R ++ +V
Sbjct: 656 APGNLAYSVTNNYLPEGNKHRTMATRV 682


>06_03_1121 +
           27767707-27768065,27768612-27769034,27770013-27770175,
           27770271-27770381,27770895-27770963,27771117-27771203,
           27771967-27772752
          Length = 665

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +3

Query: 30  VQPSRKGGGFP-NQVEGNFSKSGSIGFREPYSIP 128
           V P   G GFP N +   F   G  G  +P+ +P
Sbjct: 479 VGPMMGGRGFPPNMIGDGFGFGGGFGMPDPFGVP 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,242
Number of Sequences: 37544
Number of extensions: 269648
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)