Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0257
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.81 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.81 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.81 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 409 SSLFPHFNQNYVNNKKNRENVIHXXXXXXRSAAVEGGPGT 528
           +SL      NYV  K+   NV++       +   EGGP T
Sbjct: 376 ASLLEFVCVNYVGRKRPMHNVVYRPGENPVTQKREGGPPT 415


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 409 SSLFPHFNQNYVNNKKNRENVIHXXXXXXRSAAVEGGPGT 528
           +SL      NYV  K+   NV++       +   EGGP T
Sbjct: 396 ASLLEFVCVNYVGRKRPMHNVVYRPGENPVTQKREGGPPT 435


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 409 SSLFPHFNQNYVNNKKNRENVIHXXXXXXRSAAVEGGPGT 528
           +SL      NYV  K+   NV++       +   EGGP T
Sbjct: 345 ASLLEFVCVNYVGRKRPMHNVVYRPGENPVTQKREGGPPT 384


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 590 SHDVVKRRPVNCNTTHYRANWVPGPPSTAA 501
           S +  K++P +C+T  YR   V  P  T A
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTPLFTPA 589


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 108 GNLSIPILKNFLPPGWESRHL 46
           GNLS  +LK+ +   WE R L
Sbjct: 173 GNLSHALLKDPVKEFWERRTL 193


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 108 GNLSIPILKNFLPPGWESRHL 46
           GNLS  +LK+ +   WE R L
Sbjct: 226 GNLSHALLKDPVKEFWERRTL 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,330
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)