Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0257
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to...    30   1.1  

>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
           SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
           precursor (HSP60) [Arabidopsis thaliana]
          Length = 577

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 102 GFREPYSIPNQKKQNLFL-FIILFIRHKKYKSINSI 206
           G+  PY I NQK Q   L   ++ I  KK  SINSI
Sbjct: 228 GYTSPYFITNQKTQKCELDDPLILIHEKKISSINSI 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,272
Number of Sequences: 28952
Number of extensions: 230736
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)