Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0256
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.2  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   2.7  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   4.7  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   6.2  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    24   8.2  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    24   8.2  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    24   8.2  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    24   8.2  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    24   8.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    24   8.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    24   8.2  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    24   8.2  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    24   8.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   8.2  

>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 183 AASSLLKPEALTDI-PGINTWSPNSINTHCNKWRCLASDTCKSSWRRSR 326
           AA+ L+   ++T   P  +T  PN++NT  +  R   S+  ++  + SR
Sbjct: 160 AAAELISSSSITGARPANSTSVPNAVNTEISAARATESEASRNQTKASR 208


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 186 ASSLLKPEALTDIPGINTWSPNSINTHCNKWRCLASDTCKSSW 314
           ASSL+  +++ D PG+ T  P+S+++  ++    +SD   S +
Sbjct: 27  ASSLMSHDSIFDGPGLGTSIPSSVSSFHHQTLRPSSDASVSQF 69


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 318 RSRRPCPLHPSRENNPRTGMPRNRVRP 398
           +S R   LH SR  +PR+G PR    P
Sbjct: 337 QSLRLGSLHRSRSPSPRSGRPRRSPSP 363


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 375 FPSLGCSPSTGVTDTAGAIGAMSS 304
           FPS G + + G+TD+    GAM+S
Sbjct: 255 FPSSGNNDTPGLTDSTRIEGAMAS 278


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 241 HVLIPGISVKASGFSKELA 185
           H L+P I +  SGFSK +A
Sbjct: 545 HQLLPDILILESGFSKSVA 563


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 249 NSINTHCNKWRCLASD 296
           + +N H NKW+C+  D
Sbjct: 332 DKVNHHKNKWKCVFRD 347


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +2

Query: 257 QYALQQVALPCLRYMQELMAPIAPAVSVTPVEGEQP 364
           QY  Q V         E   P APAVS TPV    P
Sbjct: 569 QYPNQDVIKEIPVTASETSPPHAPAVSSTPVTSAPP 604


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 43  YVPWSSFWAHLSKFTIRSSAGKL 111
           ++P+S F + + K  +R S+GK+
Sbjct: 467 WIPYSLFSSEIGKLGLRESSGKM 489


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 18/77 (23%), Positives = 29/77 (37%)
 Frame = +3

Query: 174 IPPAASSLLKPEALTDIPGINTWSPNSINTHCNKWRCLASDTCKSSWRRSRRPCPLHPSR 353
           +PP  +  +       +P I ++  +      N    L S T       SR P  ++PS 
Sbjct: 323 LPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPMLMNPST 382

Query: 354 ENNPRTGMPRNRVRPEQ 404
              P  G+    +RP Q
Sbjct: 383 P-EPSLGVNSPSLRPLQ 398


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 52  WSSFWAHLSKFTIRSSAGKLDFAAQSN 132
           WS FW   S  ++ SS  K + A Q+N
Sbjct: 443 WSIFWNISSLNSLPSSLSKREIARQNN 469


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
 Frame = +3

Query: 243 SPNSINT--HCNKWRC 284
           +PNSI    HCNKW C
Sbjct: 51  NPNSILKCLHCNKWFC 66


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 90  NREL*QVSPEGRPRDVPNCCDPE 22
           NR+   V  E   RDVP+  DP+
Sbjct: 930 NRQTHDVEKESSDRDVPHLLDPD 952


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 330 PCPLHPSRENNPRTGMPRNRVRPEQ 404
           P  L   R ++P+TG  + RV PEQ
Sbjct: 336 PPGLFRGRGSHPKTGSLKRRVYPEQ 360


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 263 ALQQVALPCLRYMQELMAPIAPAVSVTPVEG 355
           ALQQ+A      + +L++P  P VSV  V+G
Sbjct: 681 ALQQIASTRHISVWQLLSPYWPTVSVAIVQG 711


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,064
Number of Sequences: 5004
Number of extensions: 33515
Number of successful extensions: 103
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)