Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0256
(417 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0501 + 21476715-21476785,21477045-21477786,21478097-214782... 31 0.49
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931... 30 0.86
10_06_0112 + 10899079-10900656,10900761-10900920,10900948-109010... 30 0.86
08_01_0206 - 1645033-1645133,1645739-1645800,1645935-1646128 30 0.86
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 29 1.1
01_07_0246 + 42253379-42253642,42253846-42254084,42254267-422544... 29 1.1
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 29 1.1
04_04_0237 + 23831949-23832354,23833970-23835166,23835274-238354... 29 1.5
10_06_0020 - 9693126-9693437,9694940-9695368 29 2.0
02_05_0342 - 28128670-28129101,28129484-28129523,28129846-281299... 28 2.6
01_05_0028 - 17337455-17337664,17338407-17338697,17339926-173402... 28 2.6
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 28 3.5
03_06_0272 - 32775620-32776501 27 4.6
09_02_0137 - 4759112-4759735 27 6.0
07_01_1059 + 9314521-9315144 27 6.0
06_03_0691 + 23552437-23552914,23555168-23555953,23556045-235561... 27 6.0
06_02_0310 + 14158693-14159316 27 6.0
03_03_0023 + 13839421-13840326 27 6.0
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 27 6.0
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 27 8.0
02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853 27 8.0
>06_03_0501 +
21476715-21476785,21477045-21477786,21478097-21478246,
21478350-21478589,21479968-21480048,21480144-21480185,
21480953-21481033,21481271-21481368,21482574-21482667,
21482733-21482861,21483881-21483931,21484023-21484049,
21484280-21484387,21484956-21485201
Length = 719
Score = 30.7 bits (66), Expect = 0.49
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 276 WRCLASDTCKSSWRRSRRP 332
W+ ASD C WRR RRP
Sbjct: 695 WQTAASDRCSIVWRRGRRP 713
>12_02_0718 +
22491241-22491897,22491989-22492126,22493017-22493142,
22493389-22493493,22493650-22494046,22494144-22494273,
22494358-22494652,22494736-22495005
Length = 705
Score = 29.9 bits (64), Expect = 0.86
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 366 LGCSPSTGVTDTAGAIGAMSSCMYLRQGNATCCN 265
+G S GVTD G ++ C +LR + TCCN
Sbjct: 386 IGLSKCNGVTDE-GISSLVTQCSHLRVIDLTCCN 418
>10_06_0112 +
10899079-10900656,10900761-10900920,10900948-10901028,
10901264-10901517
Length = 690
Score = 29.9 bits (64), Expect = 0.86
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 411 IHIVRAELCSLAFPSLGCSPSTGVTDTAGAIG 316
+H+V AE C+ AF C+ T + AGA G
Sbjct: 136 VHLVEAERCTSAFDIGSCTTKTALRCAAGASG 167
>08_01_0206 - 1645033-1645133,1645739-1645800,1645935-1646128
Length = 118
Score = 29.9 bits (64), Expect = 0.86
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 174 IPPAAS-SLLKPEALTDIPGINTWSPNSINT-HCNKWRCLASDTCKSSWRRSRRPCPLHP 347
+PPA++ + KP ++ G+N P I + + RC CKS +++ PC +H
Sbjct: 34 LPPASAFDMPKP----NLRGLN--KPKCIQCGNVARSRC-PFQCCKSCCYKAQNPCHIHG 86
Query: 348 SRENNPRTGMPRN 386
RE N G+ +N
Sbjct: 87 FREGNEGKGVEKN 99
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 312 WRRSRRPCPLHPSRENNPRTGMPRNRVRPEQYVCT 416
W PL P R+ +P N + P+ YVCT
Sbjct: 373 WAPVYSDLPLGPQRKRQSTVSLPVNLIGPKLYVCT 407
>01_07_0246 +
42253379-42253642,42253846-42254084,42254267-42254471,
42254719-42254787,42254869-42255055,42255760-42255926,
42256350-42257045
Length = 608
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 312 WRRSRRPCPLHPSRENNPRTGMPRNRVRPEQYVCT 416
W PL P R+ +P N + P+ YVCT
Sbjct: 341 WAPVYSDLPLGPQRKRQSSASLPVNLIGPKLYVCT 375
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 33 NNSVRPLVVLLGSLVKVHDSVECWEVRLRCTVKLW 137
+NSVRP + L ++ +HD + W V L TV+ W
Sbjct: 1657 SNSVRPSLHCL-AVDDMHDLLSSWSVNLLATVRKW 1690
>04_04_0237 +
23831949-23832354,23833970-23835166,23835274-23835453,
23835537-23835823,23835912-23836029,23836354-23836483,
23836693-23836861,23836926-23836991,23837466-23837738,
23838131-23838349
Length = 1014
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 156 LTEVTGIPPAASSLLKPEALTDIPGINTWSPNSINTHCNKW 278
L E T +PP +S + P + GI S + TH +W
Sbjct: 553 LLEATSLPPVSSGSVDPYVVFSCNGITRTSSVQLQTHDPQW 593
>10_06_0020 - 9693126-9693437,9694940-9695368
Length = 246
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 288 ASDTCKSSWRRSRRPCPLH 344
A C SWR+ RRPC H
Sbjct: 153 AFGACSGSWRQRRRPCSRH 171
>02_05_0342 -
28128670-28129101,28129484-28129523,28129846-28129958,
28129998-28130093,28130196-28130327,28130485-28130805
Length = 377
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +3
Query: 243 SPNSINTHCNKWR----CLASDTCKSSWRRSRRPCP 338
+P + T CN+W+ + + + SS RR RRP P
Sbjct: 285 TPFCVTTRCNRWQEHGGEITTGSSSSSCRRRRRPLP 320
>01_05_0028 -
17337455-17337664,17338407-17338697,17339926-17340218,
17340812-17340959,17341177-17341219,17341985-17342307
Length = 435
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 171 GIPPAASSLLKPEALTDIPGINTWSPNSINT-HCNKWRCLASDTCKSSWRRSRRPCPLHP 347
G PP + L +P + + +P ++ H RC A D + R + RP P P
Sbjct: 17 GFPPRHHHHHRLSVLRCVPLLPSPAPEPLSCRHGRHLRCAAVDG--GAGRETERPSPPAP 74
Query: 348 SRENNP 365
RE +P
Sbjct: 75 QREESP 80
>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 237 TWSPNSINTHCNKWRCLASD-TCKSSWRRSRRP 332
+W+ S+N+HC K R L+S +C + RS P
Sbjct: 1000 SWTNRSVNSHCQKRRKLSSPMSCCTYTERSCSP 1032
>03_06_0272 - 32775620-32776501
Length = 293
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 10 DTPPLRITTIRYVPWSSFWAHLSKFTIRSSAG---KLDFAAQSNFGCG 144
D PPLR + + S F+ ++F + SSA + +AQ CG
Sbjct: 141 DMPPLRFIVAKLLQRSDFYPQQARFLLPSSAADNLRAFLSAQEGEACG 188
>09_02_0137 - 4759112-4759735
Length = 207
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 399 RAELCSLAFPSLGCS 355
RA +C+ AFPS+GC+
Sbjct: 130 RAPVCTAAFPSIGCT 144
>07_01_1059 + 9314521-9315144
Length = 207
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 399 RAELCSLAFPSLGCS 355
RA +C+ AFPS+GC+
Sbjct: 130 RAPVCTAAFPSIGCT 144
>06_03_0691 +
23552437-23552914,23555168-23555953,23556045-23556135,
23556214-23556406
Length = 515
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 277 HLLQCVLIELGDHVLIP-GISVKASGFSKELAAGGI 173
H + L+++G+ +IP GIS K+ SK L AGGI
Sbjct: 207 HWERVCLVDIGEQAVIPEGIS-KSVNASKYLIAGGI 241
>06_02_0310 + 14158693-14159316
Length = 207
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 399 RAELCSLAFPSLGCS 355
RA +C+ AFPS+GC+
Sbjct: 130 RAPVCTAAFPSIGCT 144
>03_03_0023 + 13839421-13840326
Length = 301
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 244 DHVLIPGISVKASGFSKELAAGGIPVTSVR 155
+HVL+P SV A+G ++ L A G+P +R
Sbjct: 53 EHVLLPSPSV-AAGAAEVLLAAGVPPADLR 81
>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 27.1 bits (57), Expect = 6.0
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +3
Query: 192 SLLKPEALTDIPGINTWSPNSIN---THCNKWRCLASDTCKSSWRRSRRPCPLHPSRENN 362
S+ L D+ G WSP S + C+ C A+ S R C P+ N
Sbjct: 1382 SISNKNYLLDLSGQLLWSPCSPSHPTVPCSSGECAAASGAHKSCNNGGRACTARPT---N 1438
Query: 363 PRTG 374
P TG
Sbjct: 1439 PVTG 1442
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 26.6 bits (56), Expect = 8.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 340 NGHGRRDRRHELLHVSEARQRHLLQCVLIELGD-HVLIPGISVKASGFSKELAAGGIPV 167
+G G ++ R E+ +S RHL+ V + + H L+ V L GG+PV
Sbjct: 202 SGQGEKEFRAEVDTISRVHHRHLVTLVGYSVTEHHHLLVYEFVSNKTLDHHLHGGGLPV 260
>02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853
Length = 383
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 372 PSLGCSPSTGVTDTAGAIGAMSSCMYLRQG 283
P +GC PS VT AGA + + L +G
Sbjct: 236 PPIGCVPSVRVTSQAGATRCVDAANDLARG 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,366,734
Number of Sequences: 37544
Number of extensions: 254803
Number of successful extensions: 921
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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