Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0256
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         29   1.2  
SB_50738| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)                  29   1.5  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_17428| Best HMM Match : Hydrolase (HMM E-Value=0.0047)              28   2.7  
SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077)                 28   2.7  
SB_16746| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.7  
SB_5214| Best HMM Match : SAP (HMM E-Value=0.8)                        27   4.7  
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.7  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_35764| Best HMM Match : RVT_1 (HMM E-Value=8.1e-13)                 27   6.2  
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.2  
SB_17975| Best HMM Match : Rho_N (HMM E-Value=0.0017)                  27   6.2  
SB_15637| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              27   8.2  

>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 138 VWCCPHLTEVTGIPPAASSLLKPEALTDIPGINTWSPNSINTHCNKWRC 284
           +W  P  T+  GIPP   S  +     D+PGI   + +  +   NK+ C
Sbjct: 458 IWDIPICTDNDGIPPRMVSSRQISDHLDVPGIYAVTYDVSDQQGNKYNC 506


>SB_50738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = +3

Query: 54  VVLLGSLVKVHDSVECWEVRLRCTVKLWV 140
           ++LL + +++ D  +CWE RLRC +++++
Sbjct: 8   MLLLSNTIEMED--QCWEQRLRCVMRVFM 34


>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
          Length = 550

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 237 TWSPNSINTHCNKWRCLA 290
           TWSP +   HC  WR LA
Sbjct: 464 TWSPRTSALHCYNWRALA 481


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = +3

Query: 54   VVLLGSLVKVHDSVECWEVRLRCTVKLWV 140
            ++LL + +++ D  +CWE RLRC +++++
Sbjct: 2187 MLLLSNTIEMED--QCWEQRLRCVMRVFM 2213


>SB_17428| Best HMM Match : Hydrolase (HMM E-Value=0.0047)
          Length = 228

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 195 LLKPEALTDIPGINTWSPNSI 257
           LL+P+A TD  GI+T +PN++
Sbjct: 91  LLQPDAKTDFAGISTDNPNAV 111


>SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077)
          Length = 359

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 403 CSG-RTLFLGIPVLGLFSLDGCNGHGRRDRRHELLHVSEARQRHLL 269
           CSG R +FLG P L   +L  C G    DR  +  H+     + LL
Sbjct: 279 CSGLRNVFLGCPKLNELNLTSCRG---IDRGFKQKHIGHGNLKRLL 321


>SB_16746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 319 RRHELLHVSE--ARQRHLLQCVLIELGDHVLIPGISVKA 209
           R H LL + E  A+Q HL   + +E+  HV  P  + +A
Sbjct: 107 RAHALLDIPERTAKQHHLAHRIPVEMAQHVRSPAGATRA 145


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 315 RRSRRPCPLHPSRENNPRTGMPRNR 389
           RRSR P P H S  +  R+  PR R
Sbjct: 244 RRSRSPSPHHRSHRSRSRSRSPRRR 268


>SB_5214| Best HMM Match : SAP (HMM E-Value=0.8)
          Length = 660

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 298 VSEARQRHLLQCVLIELGDHVLIPGISVKASG 203
           +S  +   + QC    +GDH++ P I +  SG
Sbjct: 615 ISTVKTTQVCQCTSEAMGDHIIDPSIHLSPSG 646


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 249 NSINTHCNKWRCLASDTCKSSWRRSRRPCPLHPSRENNPRTGMPR-NRVRPEQ 404
           NS N H  K       T K  +  +++P  +H   E+N    MP  + + PE+
Sbjct: 374 NSSNAHGTKSSSSNKQTKKKKYTPNKQPPGIHTRTESNDIIAMPNADHISPEK 426


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 303  KSSWRRSRRPCPLHPSRENNPRTGMPRNRVRPEQ 404
            KSS  R R+  P H SRE  P +  PR R RP++
Sbjct: 1039 KSSKERPRKR-PRHQSRERRPSSSPPR-RSRPQR 1070


>SB_35764| Best HMM Match : RVT_1 (HMM E-Value=8.1e-13)
          Length = 362

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 234 NTWSPNSINTHCNKWRCLASDTCKSSWRRS--RRPCPLHPSRENNPRTGMPRNRVRP 398
           N  SP+S+  H N W    S +     R++  RR    HPS  + P +   R+ + P
Sbjct: 51  NKLSPSSVPAHWNNWEGAESSSMPDPVRKTCQRRVKTFHPS-VDTPMSTFGRSSLGP 106


>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 156 DEGSTTPKV*LCSEV*LPSTRPNREL*QVSPEGRPRDVPNC 34
           DE   TP +   SE   P  RPNR+  + +P  RP+  P C
Sbjct: 103 DEPIVTPPIPSPSESSSPK-RPNRKTKRQTPPQRPKSKPVC 142


>SB_17975| Best HMM Match : Rho_N (HMM E-Value=0.0017)
          Length = 1064

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 204 PEALTDIPGINTWSPNSINTHCNKWRCLASDTCKSSWRRSRRPCPLH 344
           P +L  I      +P ++N    K +CL S  CK S  +    C  H
Sbjct: 354 PVSLKQIDKFEKQNPYTVNVLDTKPKCLNSFRCKQSLEKHSECCDNH 400


>SB_15637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 237 TWSPNSINTHCNKWRCLASDTCKSSWRRSRRPCPLH 344
           +W+  SI+T C    CL + +C++ +      C  H
Sbjct: 111 SWTHYSIDTRCFFQPCLNNGSCQARYHDDNYTCACH 146


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 296 YMQELMAPIAPAVSVTPVEGEQPKDGNAKEQSSAR 400
           YMQ  +AP  P  + + V    P+ GN   +S +R
Sbjct: 378 YMQSPLAPPMPGYAKSKVSKNNPEAGNIDNKSRSR 412


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,976,308
Number of Sequences: 59808
Number of extensions: 292751
Number of successful extensions: 1071
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)