Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0256
(417 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125451-12|AAP13764.1| 173|Caenorhabditis elegans Hypothetical... 29 1.4
AF125451-11|AAP13763.1| 525|Caenorhabditis elegans Hypothetical... 29 1.4
AF125451-10|AAD12819.2| 511|Caenorhabditis elegans Hypothetical... 29 1.4
AF003151-2|AAK18919.3| 277|Caenorhabditis elegans Prion-like-(q... 28 3.1
AF016442-7|AAB65920.1| 481|Caenorhabditis elegans Hypothetical ... 27 4.1
Z68315-5|CAE48501.1| 689|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z35639-5|CAA84699.2| 534|Caenorhabditis elegans Hypothetical pr... 26 9.5
U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily ass... 26 9.5
AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three par... 26 9.5
>AF125451-12|AAP13764.1| 173|Caenorhabditis elegans Hypothetical
protein Y37E11B.10c protein.
Length = 173
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 177 PPAA--SSLLKPEALTDIPGINTWSPNSINT 263
PP A +SLL E LTD P I T NS+NT
Sbjct: 22 PPTACSTSLLTAEQLTDPPQIPTALSNSVNT 52
>AF125451-11|AAP13763.1| 525|Caenorhabditis elegans Hypothetical
protein Y37E11B.10b protein.
Length = 525
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 177 PPAA--SSLLKPEALTDIPGINTWSPNSINT 263
PP A +SLL E LTD P I T NS+NT
Sbjct: 22 PPTACSTSLLTAEQLTDPPQIPTALSNSVNT 52
>AF125451-10|AAD12819.2| 511|Caenorhabditis elegans Hypothetical
protein Y37E11B.10a protein.
Length = 511
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 177 PPAA--SSLLKPEALTDIPGINTWSPNSINT 263
PP A +SLL E LTD P I T NS+NT
Sbjct: 22 PPTACSTSLLTAEQLTDPPQIPTALSNSVNT 52
>AF003151-2|AAK18919.3| 277|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 24
protein.
Length = 277
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 249 NSINTHCNKWRC-LASDTC 302
N + C++WRC LA DTC
Sbjct: 57 NFVKAGCSRWRCMLAKDTC 75
>AF016442-7|AAB65920.1| 481|Caenorhabditis elegans Hypothetical
protein K12B6.7 protein.
Length = 481
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 58 SFWAHLSKFTIRSSAGKLDFAAQSNFG 138
+FW + F+ ++ GK F+ ++NFG
Sbjct: 114 NFWREIQIFSEKNFGGKFKFSVKNNFG 140
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 61 FWAHLSKFTIRSSAGKLDFAAQSNFG 138
FW + F+ ++ GK F+ ++NFG
Sbjct: 345 FWREIQIFSEKNFGGKFKFSVKNNFG 370
>Z68315-5|CAE48501.1| 689|Caenorhabditis elegans Hypothetical
protein F28C6.4b protein.
Length = 689
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 189 SSLLKPEALTDIPGINTWSPNSINTHCNKWRCLASDTCKSSWRRSRRPCPLH 344
SSLL P +D + PN++NT N++ + TC W + H
Sbjct: 501 SSLLPPSIFSDTLD---FQPNNLNTILNEYPIIVILTCSLFWMYGYKQSKFH 549
>Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical
protein F28C6.4a protein.
Length = 745
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 189 SSLLKPEALTDIPGINTWSPNSINTHCNKWRCLASDTCKSSWRRSRRPCPLH 344
SSLL P +D + PN++NT N++ + TC W + H
Sbjct: 501 SSLLPPSIFSDTLD---FQPNNLNTILNEYPIIVILTCSLFWMYGYKQSKFH 549
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 90 SVECWEVRLRCTVKLWVWCCPHLTEVTGIPPAASSLLKPEALT 218
S EC+ V L + + CCP T + G+PP S L LT
Sbjct: 630 SHECYGVSLGPDMMSYR-CCPTKTYICGLPPQQGSSLCSGGLT 671
>Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical
protein F47G4.4 protein.
Length = 722
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 150 PHLTEVTGIPPAASSLLKPEALTDIPGINTWSPNSINT 263
P LTE++ +PP + L E T +N+ S +S T
Sbjct: 324 PELTELSNLPPRSPGLSCEETETSASPVNSSSSHSSPT 361
>Z35639-5|CAA84699.2| 534|Caenorhabditis elegans Hypothetical
protein D2045.9 protein.
Length = 534
Score = 26.2 bits (55), Expect = 9.5
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +3
Query: 24 QDHNNSVRPLVVLLGSLVKVHDSVECW--EVRLRCTVKLWVWCCPHLTEVTGIPPAASSL 197
QD + S +P ++ K ++ E W + R +V+ W ++ + G A L
Sbjct: 402 QDLDASHKPWDLIYLGRKKQSENEELWISQHRHLSSVEYSYWTLGYMLSLNG----ARKL 457
Query: 198 LKPEALTDIPGINTWSPNSINTHCNK 275
L+P L + ++ + P N H NK
Sbjct: 458 LRPNPLKKMVPVDEYLPIMFNKHPNK 483
>U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily
assigned gene nameprotein 127 protein.
Length = 862
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 153 HLTEVTGIPPAASSLLKPEALTDIPGINTWSPNSINTHCNK 275
H EV+ PP L P + T P + T PN HC +
Sbjct: 810 HSIEVSVPPPPE---LPPPSKTPSPNLPTHKPNKSKVHCEE 847
>AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three
paralog protein 3 protein.
Length = 739
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 323 APAVSVTPVEGEQPKDGNAKEQ 388
APAV +TP E P + KEQ
Sbjct: 351 APAVPITPTEPASPVESPVKEQ 372
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,944,411
Number of Sequences: 27780
Number of extensions: 200264
Number of successful extensions: 674
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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