Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0256
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.34 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.79 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.4  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    20   9.7  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    20   9.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   9.7  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.34
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 156 LTEVTGIPPAASSLLKPEALTDIPGINTWS 245
           + +V    P  + L+ P A+ ++PG + WS
Sbjct: 401 VADVAASGPGLAFLVYPSAVLELPGSSIWS 430


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 180 PAASSLLKPEALTDIPGINTWS 245
           P  + L+ P A+ ++PG + WS
Sbjct: 356 PGLAFLVYPSAVLELPGSSIWS 377


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 46  VPWSSFWAHL 75
           + W SFW H+
Sbjct: 248 ISWVSFWLHM 257


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 46  VPWSSFWAHLSKFTIRSSAG 105
           V W SFW   S    R S G
Sbjct: 258 VSWVSFWLDQSAVPARVSLG 277


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 46  VPWSSFWAHLSKFTIRSSAG 105
           V W SFW   S    R S G
Sbjct: 258 VSWVSFWLDQSAVPARVSLG 277


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 340 NGHGRRDRRHELLH 299
           N   R+DRR+E LH
Sbjct: 9   NREYRKDRRYEKLH 22


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 340 NGHGRRDRRHELLH 299
           N   R+DRR+E LH
Sbjct: 9   NREYRKDRRYEKLH 22


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 105 PSTRPNREL*QVSPEGRP 52
           P TRP R   +  PE  P
Sbjct: 24  PPTRPTRLRREAKPEAEP 41


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 105 PSTRPNREL*QVSPEGRP 52
           P TRP R   +  PE  P
Sbjct: 25  PPTRPTRLRREAEPEAEP 42


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 140 HPKFDCAAKSNFPAL 96
           HPK+  A  + FP+L
Sbjct: 335 HPKYRAALFAKFPSL 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,859
Number of Sequences: 438
Number of extensions: 2258
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)