Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0256
         (417 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18830.1 68414.m02345 transducin family protein / WD-40 repea...    31   0.24 
At4g23650.1 68417.m03405 calcium-dependent protein kinase, putat...    28   2.2  
At4g20270.1 68417.m02961 leucine-rich repeat transmembrane prote...    28   2.2  
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro...    28   2.2  
At1g55980.1 68414.m06421 expressed protein                             28   2.2  
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara...    27   6.7  
At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family pr...    27   6.7  
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    26   8.9  
At3g08010.1 68416.m00978 expressed protein                             26   8.9  

>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
           family protein similar to Sec31p (GI:13928450)  {Oryza
           sativa}
          Length = 969

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 9/27 (33%), Positives = 21/27 (77%)
 Frame = -3

Query: 367 LGLFSLDGCNGHGRRDRRHELLHVSEA 287
           +G+++L+GC+ +G  +++H L H+ +A
Sbjct: 320 IGIYNLEGCSSYGTENQQHFLFHLLDA 346


>At4g23650.1 68417.m03405 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Marchantia polymorpha] gi|5162877|dbj|BAA81748;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 529

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 8   GTRRLSGSQQFGTSLGRPSGLTCQSSRFGRVLG 106
           G+R  + +QQ G  LGRP     ++  FGR LG
Sbjct: 53  GSRSTTSTQQNGRILGRPMEEVRRTYEFGRELG 85


>At4g20270.1 68417.m02961 leucine-rich repeat transmembrane protein
           kinase, putative CLAVATA1 receptor kinase, Arabidopsis
           th., PATX:G2160756
          Length = 992

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 391 TLFLGIPVLGLFSLDGCNGHGRRDRRHELLHVSEARQR 278
           T FLG P L  FS + CNG  +   + +LL+ + AR R
Sbjct: 614 TSFLGNPFLCGFSSNPCNG-SQNQSQSQLLNQNNARSR 650


>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 384

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 PHLTEVTGIPPAASSLLKPEALTDIPGI 233
           P  T+VTG+PP     L PE  T +  I
Sbjct: 195 PRFTQVTGLPPPLDLSLVPELATKLQNI 222


>At1g55980.1 68414.m06421 expressed protein
          Length = 464

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 PHLTEVTGIPPAASSLLKPEALTDIPGI 233
           P  T+VTG+PP     L PE  T +  I
Sbjct: 333 PRFTQVTGLPPPLDLSLVPELATKLQNI 360


>At2g42170.1 68415.m05219 actin, putative similar to actin 2
           [Arabidopsis thaliana] gi|9293903|dbj|BAB01806
          Length = 329

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 179 WYPSYFSEMRAAP--HPKFDCAAKSNFPALDR 90
           WY +++SE+R AP  HP     A  N P  DR
Sbjct: 43  WYHTFYSELRVAPEEHPVLLTEAPLN-PKADR 73


>At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 258

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 370 VLGLFSLDGCNGHGRRDRRHELLHVSEARQRHLLQ 266
           +LG+F+ D C+       R ELL +S     HL Q
Sbjct: 12  LLGMFNFDQCSSSKEERPRDELLGLSSLYNGHLHQ 46


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 352 LDGCNGHGRRDRRHELLHV 296
           +D C G+ R +R HELL++
Sbjct: 576 IDICRGNNRHERAHELLYL 594


>At3g08010.1 68416.m00978 expressed protein
          Length = 374

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -3

Query: 256 IELGDHVLIPGISVKASGFSKELAA--GGIPVTSV 158
           IE+ ++ LIPG+SV A+  +K LAA   G+ V S+
Sbjct: 266 IEVDENTLIPGLSV-ATSRAKPLAAWMNGLEVCSI 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,517,160
Number of Sequences: 28952
Number of extensions: 188710
Number of successful extensions: 622
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)