Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0255
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 159 3e-40
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 75 1e-14
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 73 3e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 71 1e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 59 7e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 47 2e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 45 9e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 45 9e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.002
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.5
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 4.6
SPBC1685.13 |||non classical export pathway protein |Schizosacch... 26 6.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.1
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 8.1
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 159 bits (387), Expect = 3e-40
Identities = 83/131 (63%), Positives = 95/131 (72%), Gaps = 4/131 (3%)
Frame = -1
Query: 652 TMENERFPLPRGFLPTLVLGYESLR-HPRDHI*LHH---EVRRGHP*GLVRQTVLSGGTT 485
T+ NERF P LG E+ H + + ++R+ L V+SGGTT
Sbjct: 249 TIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKD----LYGNVVMSGGTT 304
Query: 484 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 305
MYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 305 MYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 304 SGPSIVHRKCF 272
SGP IV+RKCF
Sbjct: 365 SGPGIVYRKCF 375
Score = 28.7 bits (61), Expect = 0.87
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 692 LKKSYELPAGQVIHYGKRKIPVAQRL 615
L+KSYELP GQVI G + + L
Sbjct: 236 LEKSYELPDGQVITIGNERFRAPEAL 261
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 74.9 bits (176), Expect = 1e-14
Identities = 36/88 (40%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Frame = -1
Query: 520 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 350
L+ ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 349 STFQQMWISKQEYDESGP---SIVHRKC 275
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 654 PLWKTKDSRCPEAFFQPSFLGMKACGIHETTYNSIMKCDVDIRKDL 517
P+ +T+++ + + + GI + N I +CDVDIR L
Sbjct: 301 PIEQTENNEVSQQDSSVTNTSSRILGIPQLFQNCISECDVDIRASL 346
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 73.3 bits (172), Expect = 3e-14
Identities = 34/83 (40%), Positives = 56/83 (67%)
Frame = -1
Query: 520 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 341
L VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 340 QQMWISKQEYDESGPSIVHRKCF 272
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
Score = 40.3 bits (90), Expect = 3e-04
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -2
Query: 624 PEAFFQPSFLGMKACGIHETTYNSIMKCDVDIRKDLYA 511
PE F P +G +A G+H + SI+ D+D+R LY+
Sbjct: 263 PEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYS 300
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 71.3 bits (167), Expect = 1e-13
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = -1
Query: 520 LVRQTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 347
L+ V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 346 TFQQMWISKQEYDESG 299
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
Score = 29.9 bits (64), Expect = 0.38
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Frame = -2
Query: 630 RCPEAFFQPSFLGMKAC---------GIHETTYNSIMKCDVDIRKDL 517
R E F PSF ++ G+HE Y SI+ CD ++R L
Sbjct: 297 RISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPL 343
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 58.8 bits (136), Expect = 7e-10
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Frame = -1
Query: 520 LVRQTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 374
L R VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 373 GGSILAS-LSTFQQMWISKQEYDESG 299
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2
Query: 627 CPEAFFQPSFLGMKACGIHETTYNSIMKCDVDIRKDLY 514
CPE FQP +G + G+ E +++I DVDIRK LY
Sbjct: 257 CPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLY 294
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Frame = -1
Query: 523 GLVRQTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 386
GL + VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 385 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 281
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 45.2 bits (102), Expect = 9e-06
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = -1
Query: 520 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 341
L+ V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 340 QQMWISKQEYDESGPSIVHRK 278
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 45.2 bits (102), Expect = 9e-06
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = -1
Query: 520 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 341
LV +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 340 QQMWISKQEYDESGPSIV 287
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = -1
Query: 520 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 350
L ++ GG +PG A +++ I + + I +I PP + ++ W G I +
Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588
Query: 349 STFQQMWISKQEYDESGPSIVHRK 278
++WI ++ G ++ K
Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 379 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 278
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.2 bits (55), Expect = 4.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 552 IMKCDVDIRKDLYAKPYCPVV 490
+ C V++R ++YA+ CP+V
Sbjct: 478 LFACPVELRPEVYARMLCPLV 498
>SPBC1685.13 |||non classical export pathway protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 545 FMMELYVVSWMPQAFIPKNE 604
FM LYV S++ Q FI KN+
Sbjct: 136 FMFGLYVASFIVQIFIAKND 155
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 387 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 292
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 454 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 344
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -3
Query: 497 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 318
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 317 GV 312
V
Sbjct: 534 AV 535
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -3
Query: 374 RWIDPRLPLYLPTDVDLETGVRRVWPLHCTQEVL----LNAPRVLPP 246
+W+D YLP V L TG W + C L L R+LPP
Sbjct: 629 KWMD-----YLPRPVILVTGSIHFWSIACDDGSLHLYSLTGSRLLPP 670
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,393
Number of Sequences: 5004
Number of extensions: 64755
Number of successful extensions: 198
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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