Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0255
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 2e-42
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 6e-42
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 6e-42
SB_56| Best HMM Match : Actin (HMM E-Value=0) 167 6e-42
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 167 8e-42
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 2e-41
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 145 4e-35
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 55 7e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 55 7e-08
SB_54| Best HMM Match : Actin (HMM E-Value=0) 49 4e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 28 6.5
SB_44619| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 169 bits (411), Expect = 2e-42
Identities = 89/131 (67%), Positives = 99/131 (75%), Gaps = 4/131 (3%)
Frame = -1
Query: 652 TMENERFPLPRGFLPTLVLGYESLR-HPRDHI*LHH---EVRRGHP*GLVRQTVLSGGTT 485
T+ NERF P L LG ES H + + ++R+ L TV+SGGTT
Sbjct: 223 TIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKD----LYANTVMSGGTT 278
Query: 484 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 305
MYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 279 MYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 338
Query: 304 SGPSIVHRKCF 272
SGP+IVHRKCF
Sbjct: 339 SGPAIVHRKCF 349
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 167 bits (407), Expect = 6e-42
Identities = 89/131 (67%), Positives = 97/131 (74%), Gaps = 4/131 (3%)
Frame = -1
Query: 652 TMENERFPLPRGFLPTLVLGYESLR-HPRDHI*LHH---EVRRGHP*GLVRQTVLSGGTT 485
T+ NERF P LG ES H + + ++R+ L TVLSGGTT
Sbjct: 212 TIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGTT 267
Query: 484 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 305
MYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 268 MYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 327
Query: 304 SGPSIVHRKCF 272
SGP+IVHRKCF
Sbjct: 328 SGPAIVHRKCF 338
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 692 LKKSYELPAGQVIHYGKRK 636
L+KSYELP GQVI G +
Sbjct: 199 LEKSYELPDGQVITIGNER 217
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 167 bits (407), Expect = 6e-42
Identities = 89/131 (67%), Positives = 97/131 (74%), Gaps = 4/131 (3%)
Frame = -1
Query: 652 TMENERFPLPRGFLPTLVLGYESLR-HPRDHI*LHH---EVRRGHP*GLVRQTVLSGGTT 485
T+ NERF P LG ES H + + ++R+ L TVLSGG+T
Sbjct: 250 TIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGST 305
Query: 484 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 305
MYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 306 MYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 365
Query: 304 SGPSIVHRKCF 272
SGPSIVHRKCF
Sbjct: 366 SGPSIVHRKCF 376
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 692 LKKSYELPAGQVIHYGKRK 636
L+KSYELP GQVI G +
Sbjct: 237 LEKSYELPDGQVITIGNER 255
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 167 bits (407), Expect = 6e-42
Identities = 89/131 (67%), Positives = 97/131 (74%), Gaps = 4/131 (3%)
Frame = -1
Query: 652 TMENERFPLPRGFLPTLVLGYESLR-HPRDHI*LHH---EVRRGHP*GLVRQTVLSGGTT 485
T+ NERF P LG ES H + + ++R+ L TVLSGG+T
Sbjct: 249 TIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGST 304
Query: 484 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 305
MYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 305 MYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 304 SGPSIVHRKCF 272
SGPSIVHRKCF
Sbjct: 365 SGPSIVHRKCF 375
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 692 LKKSYELPAGQVIHYGKRK 636
L+KSYELP GQVI G +
Sbjct: 236 LEKSYELPDGQVITIGNER 254
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 167 bits (406), Expect = 8e-42
Identities = 89/131 (67%), Positives = 97/131 (74%), Gaps = 4/131 (3%)
Frame = -1
Query: 652 TMENERFPLPRGFLPTLVLGYESLR-HPRDHI*LHH---EVRRGHP*GLVRQTVLSGGTT 485
T+ NERF P LG ES H + + ++R+ L TVLSGG+T
Sbjct: 250 TIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGST 305
Query: 484 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 305
MYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 306 MYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 365
Query: 304 SGPSIVHRKCF 272
SGPSIVHRKCF
Sbjct: 366 SGPSIVHRKCF 376
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 692 LKKSYELPAGQVIHYGKRK 636
L+KSYELP GQVI G +
Sbjct: 237 LEKSYELPDGQVITIGNER 255
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 165 bits (402), Expect = 2e-41
Identities = 88/131 (67%), Positives = 97/131 (74%), Gaps = 4/131 (3%)
Frame = -1
Query: 652 TMENERFPLPRGFLPTLVLGYESLR-HPRDHI*LHH---EVRRGHP*GLVRQTVLSGGTT 485
T+ NERF P LG ES H + + ++R+ L TVLSGG+T
Sbjct: 249 TIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGST 304
Query: 484 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 305
M+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 305 MFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 304 SGPSIVHRKCF 272
SGPSIVHRKCF
Sbjct: 365 SGPSIVHRKCF 375
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 692 LKKSYELPAGQVIHYGKRK 636
L+KSYELP GQVI G +
Sbjct: 236 LEKSYELPDGQVITIGNER 254
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 145 bits (351), Expect = 4e-35
Identities = 77/146 (52%), Positives = 96/146 (65%), Gaps = 3/146 (2%)
Frame = -1
Query: 700 APPSKSLTNFPPVRSSTMENERFPLPRGFLPTLVLGYESLRHPRDHI*LHHEVRRGHP*- 524
+P + P + ++ NERF P LG E+ P H +++ + +
Sbjct: 7 SPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEA---PGIHEAIYNCIMKCDVDI 63
Query: 523 --GLVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 350
L VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASL
Sbjct: 64 RKDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASL 123
Query: 349 STFQQMWISKQEYDESGPSIVHRKCF 272
STFQQMWI+K+EY E GP IVHRKCF
Sbjct: 124 STFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 54.8 bits (126), Expect = 7e-08
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 16/103 (15%)
Frame = -1
Query: 520 LVRQTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPERK 389
L + VLSGG+TM+ R+Q++I + P ++ ++I+ ++
Sbjct: 242 LYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQR 301
Query: 388 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 260
Y+VW GGS+LAS F + +K +YDE GPSI F HR
Sbjct: 302 YAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 54.8 bits (126), Expect = 7e-08
Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = -1
Query: 523 GLVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 353
GL +++GG T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 352 L 350
L
Sbjct: 230 L 230
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -2
Query: 630 RCPEAFFQPSFLGMKACGIHETTYNSIMKCDVDIRKDLY 514
R E FQPS LG GIHE+ + SI KCD+D+R +L+
Sbjct: 2301 RAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDLRAELF 2339
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -1
Query: 520 LVRQTVLSGGTTMYPGIADRMQKEITA-LAPSTMKIKIIAPPERKYSVWIGGSILAS-LS 347
L + VL G T+ Q +TA KI+I PP RK+ V++GG++LA +
Sbjct: 324 LYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADIMK 383
Query: 346 TFQQMWISKQEYDESG 299
W++++EY+E G
Sbjct: 384 DKDSFWMTRKEYEEKG 399
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 624 PEAFFQPSFLGMKACGIHETTYNSIMKCDVDIRKDLY 514
PEA FQP + ++ G+ E +N+I D+D R + Y
Sbjct: 262 PEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFY 298
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Frame = -1
Query: 520 LVRQTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 368
L VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
Query: 367 SILASLSTFQQMWISKQEYDE 305
+I SL +++ Y +
Sbjct: 137 AIFGSLEVLADRSTTRERYQQ 157
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 624 PEAFFQPSFLGMKACGIHET 565
PE FQPS LG++ GI ET
Sbjct: 3 PEIIFQPSMLGLEQAGITET 22
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = -2
Query: 699 PPPQKVLRTSRRSGHPL-WKT--KDSRCPEAFFQPSFLGMKACGIHETTYNSIMKCDVDI 529
PP K +R PL W T + RCP ++ + +++ TY +C
Sbjct: 65 PPLTKCTNYRKRRCPPLTWCTNYRKRRCPPLTRCTNYRKRRCPPLNKCTYYRKRRCPPLT 124
Query: 528 RKDLYAKPYCPVVPPCT 478
R Y K CP + CT
Sbjct: 125 RCTNYRKRRCPPLTKCT 141
>SB_44619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 682 LTNFPPVRSSTMENERFPLPRGFLPTLVLGYESLR 578
L++F P+ S++ +E +P GFL T Y++LR
Sbjct: 3 LSHFAPLDISSLADENLYVPPGFLVTDEKAYKALR 37
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,889,339
Number of Sequences: 59808
Number of extensions: 553595
Number of successful extensions: 1542
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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