Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0255
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             132   4e-33
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  132 bits (318), Expect = 4e-33
 Identities = 73/114 (64%), Positives = 81/114 (71%), Gaps = 4/114 (3%)
 Frame = -1

Query: 652 TMENERFPLPRGFLPTLVLGYESLR-HPRDHI*LHH---EVRRGHP*GLVRQTVLSGGTT 485
           T+ NERF  P        LG E+   H   +  +     ++R+     L   TVLSGGTT
Sbjct: 24  TIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKD----LYANTVLSGGTT 79

Query: 484 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 323
           MYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 80  MYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 28.3 bits (60), Expect = 0.076
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 692 LKKSYELPAGQVIHYGKRKIPVAQRL 615
           L+KSYELP GQVI  G  +    + L
Sbjct: 11  LEKSYELPDGQVITIGNERFRCPEAL 36


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 506 RIVRWYHHVPWNRRPYAK 453
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 506 RIVRWYHHVPWNRRPYAK 453
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +2

Query: 566 VSWMPQAFIPKNEGWKKASG 625
           + W   AFIP N  W    G
Sbjct: 561 IEWFDYAFIPGNLKWLDIHG 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,024
Number of Sequences: 438
Number of extensions: 5241
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)