Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0254
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    27   2.5  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   4.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.6  

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 560 KYPLACANAISKIEDIIKHS 501
           K    CA+AISKI DIIK++
Sbjct: 65  KQDAQCASAISKISDIIKNT 84


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
          catalytic subunit|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 12 VKTKSFFFCRYNISKCSID 68
          +KTK F +CR+  SK  ID
Sbjct: 20 IKTKKFLYCRHYSSKSFID 38


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
 Frame = +1

Query: 169  NISKIECRNKSTLFIYKFQY-----FNSRPCKYKFYLLFWLAVYFSAE 297
            ++ + EC  +S   I    Y     FNS+  +   + L W AVY   E
Sbjct: 1404 DLKQTECNAQSDKIIKSITYWQSLLFNSKTYQKDLFSLLWYAVYIMVE 1451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,657
Number of Sequences: 5004
Number of extensions: 54069
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)