Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0254
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6)                 31   0.65 
SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)                 29   4.6  
SB_17593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17)           28   8.0  
SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)                    28   8.0  
SB_31499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6)
          Length = 421

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 456 LTKLIYHRIIVSGAITINWSSGIGYIMQHL-NI*QWWLALFHLRDFSQKSHRF*LSREVD 280
           +T L+Y  ++   A  I+W S +      L    +W L++  LRDF +++H       VD
Sbjct: 150 ITSLLYLAVLTERAFIIHWHSSVSLENYFLPRSIRWNLSIEKLRDFKKRAHFLGRGNHVD 209


>SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)
          Length = 398

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 238 RPCKYKFYLLFWLAVYFSAELKPV 309
           + C Y F LL  LAVY SAEL+P+
Sbjct: 132 KSCLYTFLLLI-LAVYSSAELQPI 154


>SB_17593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 184 ECRNKSTLFIYKFQYFNSRPCKY-KFYLLFWLA 279
           E R  S+LF    +YFNS PC   + Y+  W+A
Sbjct: 176 ESRKGSSLFARLDEYFNSSPCHVPEEYIRTWMA 208


>SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17)
          Length = 551

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 478 TESVLHNSDKINLSSDYSLWSDHHKLVQRNWLYNAAFKYLTM 353
           TE  + +SD  N+ S   +  DH+ L  R W  +  + +L +
Sbjct: 346 TEPQVASSDAANIESSIRVDGDHYVLNGRKWWISGVYLFLAL 387


>SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)
          Length = 525

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 191 EINQLYLFINSNTLTLDLANTNFI 262
           E+N +Y ++ +N LTL++  TN++
Sbjct: 465 ELNNVYEWLTANKLTLNIKKTNYV 488


>SB_31499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 148 HYFRLVKYKSLTIYRTYRYI 89
           HYF  +    L++YR YRYI
Sbjct: 212 HYFEAITIPRLSLYRGYRYI 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,087,099
Number of Sequences: 59808
Number of extensions: 363840
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)