Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0254
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL731544-3|CAI14998.1|  431|Homo sapiens novel SH2 domain-contai...    30   6.6  
AL731544-2|CAI14997.1|  357|Homo sapiens novel SH2 domain-contai...    30   6.6  
AL731544-1|CAI14996.1|  215|Homo sapiens novel SH2 domain-contai...    30   6.6  
AK123978-1|BAC85741.1|  309|Homo sapiens protein ( Homo sapiens ...    30   6.6  
AK123885-1|BAC85715.1|  357|Homo sapiens protein ( Homo sapiens ...    30   6.6  

>AL731544-3|CAI14998.1|  431|Homo sapiens novel SH2
           domain-containing protein protein.
          Length = 431

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 388 WLYNAAFKYLTMVAGSVPSERLFTKIAQVLTQQRSRLQAKR 266
           WL  A  +    + G  P ++ + +I++ L  +R+RLQA+R
Sbjct: 69  WLLGADGEVWVWIMGEGPGDKPYEEISEELIAERARLQAQR 109


>AL731544-2|CAI14997.1|  357|Homo sapiens novel SH2
           domain-containing protein protein.
          Length = 357

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 388 WLYNAAFKYLTMVAGSVPSERLFTKIAQVLTQQRSRLQAKR 266
           WL  A  +    + G  P ++ + +I++ L  +R+RLQA+R
Sbjct: 70  WLLGADGEVWVWIMGEGPGDKPYEEISEELIAERARLQAQR 110


>AL731544-1|CAI14996.1|  215|Homo sapiens novel SH2
           domain-containing protein protein.
          Length = 215

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 388 WLYNAAFKYLTMVAGSVPSERLFTKIAQVLTQQRSRLQAKR 266
           WL  A  +    + G  P ++ + +I++ L  +R+RLQA+R
Sbjct: 69  WLLGADGEVWVWIMGEGPGDKPYEEISEELIAERARLQAQR 109


>AK123978-1|BAC85741.1|  309|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41984 fis, clone SPLEN2011422, weakly  similar
           to CALDESMON. ).
          Length = 309

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 388 WLYNAAFKYLTMVAGSVPSERLFTKIAQVLTQQRSRLQAKR 266
           WL  A  +    + G  P ++ + +I++ L  +R+RLQA+R
Sbjct: 21  WLLGADGEVWVWIMGEGPGDKPYEEISEELIAERARLQAQR 61


>AK123885-1|BAC85715.1|  357|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41891 fis, clone OCBBF2025028. ).
          Length = 357

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 388 WLYNAAFKYLTMVAGSVPSERLFTKIAQVLTQQRSRLQAKR 266
           WL  A  +    + G  P ++ + +I++ L  +R+RLQA+R
Sbjct: 70  WLLGADGEVWVWIMGEGPGDKPYEEISEELIAERARLQAQR 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,473,911
Number of Sequences: 237096
Number of extensions: 1677842
Number of successful extensions: 2192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2192
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)