Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0254
         (679 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071269-1|AAL48891.1|  555|Drosophila melanogaster RE30177p pro...    30   3.3  
AE014134-2397|AAF53330.3|  555|Drosophila melanogaster CG16863-P...    30   3.3  
AE014134-2396|ABI31315.1|  661|Drosophila melanogaster CG16863-P...    30   3.3  

>AY071269-1|AAL48891.1|  555|Drosophila melanogaster RE30177p
           protein.
          Length = 555

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 388 WLYNAAFKYLTMVAGSVPSERLFTKIAQVLTQQRSRLQAKRVNKI 254
           +L+N A +YL + A + P++RLFT     +  Q +RL    +  I
Sbjct: 498 FLHNVAQRYLHVPATAEPADRLFTAEGAAVAAQYARLIENNMENI 542


>AE014134-2397|AAF53330.3|  555|Drosophila melanogaster CG16863-PA,
           isoform A protein.
          Length = 555

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 388 WLYNAAFKYLTMVAGSVPSERLFTKIAQVLTQQRSRLQAKRVNKI 254
           +L+N A +YL + A + P++RLFT     +  Q +RL    +  I
Sbjct: 498 FLHNVAQRYLHVPATAEPADRLFTAEGAAVAAQYARLIENNMENI 542


>AE014134-2396|ABI31315.1|  661|Drosophila melanogaster CG16863-PB,
           isoform B protein.
          Length = 661

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 388 WLYNAAFKYLTMVAGSVPSERLFTKIAQVLTQQRSRLQAKRVNKI 254
           +L+N A +YL + A + P++RLFT     +  Q +RL    +  I
Sbjct: 604 FLHNVAQRYLHVPATAEPADRLFTAEGAAVAAQYARLIENNMENI 648


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,466,657
Number of Sequences: 53049
Number of extensions: 520506
Number of successful extensions: 1209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)