Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0254
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-12|AAB54166.1|   98|Caenorhabditis elegans Hypothetical...    37   0.012
U23526-4|AAB36849.1|  204|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U23526-3|AAT92089.1|  225|Caenorhabditis elegans Hypothetical pr...    30   1.3  

>AF003139-12|AAB54166.1|   98|Caenorhabditis elegans Hypothetical
           protein F53G12.11 protein.
          Length = 98

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -1

Query: 490 LCTTTE-SVLHNSDKINLSSDYSLWSDHHKLVQRNWLYNAAFKYLTMVAGSVPSERLFTK 314
           LC + E  V +++D    S     W +     +   L   A +YLT  A S  SER+F+ 
Sbjct: 2   LCASAEVEVFYDTDNNRKSDPAVFWQNPLNRSKFPLLSQIANRYLTTPASSAESERVFSG 61

Query: 313 IAQVLTQQRSRLQAKRVNK 257
             +V T+ R ++  K ++K
Sbjct: 62  AGRVSTKLRRKMSTKSLSK 80


>U23526-4|AAB36849.1|  204|Caenorhabditis elegans Hypothetical
           protein C01C10.2a protein.
          Length = 204

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 466 LHNSDKINLSSDYSLWSDHHKLVQRNWLYNAAFKYLTMV 350
           +  +D++  S D +    H KL +RN  +  AF+YLT +
Sbjct: 55  VQQNDEVLFSCDDAFIKIHQKLAERNSQFEDAFEYLTAI 93


>U23526-3|AAT92089.1|  225|Caenorhabditis elegans Hypothetical
           protein C01C10.2b protein.
          Length = 225

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 466 LHNSDKINLSSDYSLWSDHHKLVQRNWLYNAAFKYLTMV 350
           +  +D++  S D +    H KL +RN  +  AF+YLT +
Sbjct: 55  VQQNDEVLFSCDDAFIKIHQKLAERNSQFEDAFEYLTAI 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,745,273
Number of Sequences: 27780
Number of extensions: 291647
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)