Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0254
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23630.1 68416.m02972 adenylate isopentenyltransferase 7 / cy...    34   0.099
At3g44120.1 68416.m04730 F-box family protein contains Pfam:PF00...    29   2.8  
At2g07140.1 68415.m00816 F-box family protein contains Pfam:PF00...    29   2.8  
At4g10200.1 68417.m01672 hAT dimerisation domain-containing prot...    28   4.9  

>At3g23630.1 68416.m02972 adenylate isopentenyltransferase 7 /
           cytokinin synthase (IPT7) identical to adenylate
           isopentenyltransferase (IPT7) [Arabidopsis thaliana]
           GI:14279066
          Length = 329

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 629 EHGNRSSLAIAPILGQRFKKF--HFKYPLACANAISKIEDIIKHSAG*IMYNYGICF 465
           E GN ++   + +  Q   K   + K P+    + S IE ++ HS+G ++ NY  CF
Sbjct: 100 EAGNLTATQYSRLASQAISKLSANNKLPIVAGGSNSYIEALVNHSSGFLLNNYDCCF 156


>At3g44120.1 68416.m04730 F-box family protein contains Pfam:PF00646
           F-box domain ; contains TIGRFAM TIGR01640: F-box protein
           interaction domain ; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 384

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 656 PLTEITSAIEHGNRSSLAIAPILGQRFKKFHFKYPLACANAISKIEDIIKHSA 498
           PLT +T  IE G+R +  +A ILG   K  +  Y     N + K  +I + S+
Sbjct: 127 PLTGVTKWIELGDRYNEGMAFILGYDNKSCNKSYKAMSFNYLDKDSEIYEFSS 179


>At2g07140.1 68415.m00816 F-box family protein contains Pfam:PF00646
           F-box domain ; contains TIGRFAM TIGR01640: F-box protein
           interaction domain ; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 384

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 656 PLTEITSAIEHGNRSSLAIAPILGQRFKKFHFKYPLACANAISKIEDIIKHSA 498
           PLT +T  IE G+R +  +A ILG   K  +  Y     N + K  +I + S+
Sbjct: 127 PLTGVTKWIELGDRYNEGMAFILGYDNKSCNKSYKAMSFNYLDKDSEIYEFSS 179


>At4g10200.1 68417.m01672 hAT dimerisation domain-containing protein
           / transposase-related low similarity to transposase
           [Ipomoea purpurea] AB004906 GI:4063770
          Length = 733

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 373 AFKYLTMVAGSVPS-ERLFTKIAQVLTQQRSRLQAKRVNKICICKV 239
           AF+ +  V  SV S ER F+K+  + +  RS +  +R+N + I  +
Sbjct: 654 AFRVMLTVPVSVASAERSFSKLKLIKSYSRSTMSEERLNALAILSI 699


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,260
Number of Sequences: 28952
Number of extensions: 257126
Number of successful extensions: 528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)