Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0253
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   2.8  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   5.0  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    26   5.0  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.7  

>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 213 RVTCRHPWISLISPSADSNNDSVLPPLERSVNSILP 106
           R  C HPW+ +   +A  +NDS         N I P
Sbjct: 697 RQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQIYP 732


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 533 LRHAQLQDAGRQDA*YPLLSWDTSSSV 453
           LRH +     R+D  Y  L+W+ SSS+
Sbjct: 289 LRHGEFSLRRREDEKYTGLAWNVSSSI 315


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 252 SFFKNINDTKGYDRVTCRHPWISLISPSADSNNDSVLPPL 133
           S F+N    K    V  R+P+I ++    DSN+ S   PL
Sbjct: 266 SIFQN-KSVKASGAVAIRNPYIRVVGIQMDSNDGSKSTPL 304


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 481 CCLGTLLVR*NSFSDTTYS*AASVECSTAW 392
           C LGT L+  + FS +++    S+ CS+ +
Sbjct: 22  CSLGTCLIHFHEFSSSSFMDPVSLFCSSPY 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,926
Number of Sequences: 5004
Number of extensions: 44066
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)