Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0253
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0057 + 21995018-21997006                                         29   3.8  
01_05_0634 + 23843152-23843272,23843441-23843628,23843876-238442...    29   3.8  
07_03_0588 - 19715677-19715754,19715843-19715942,19716170-197162...    28   6.7  
05_04_0259 + 19494629-19495394,19495408-19495949                       28   6.7  
01_01_1046 - 8246740-8247504                                           27   8.8  

>05_05_0057 + 21995018-21997006
          Length = 662

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = -2

Query: 549 LRFALTPTRSASGRR 505
           LRF LTP RSASGRR
Sbjct: 623 LRFYLTPMRSASGRR 637


>01_05_0634 +
           23843152-23843272,23843441-23843628,23843876-23844205,
           23844319-23844565,23844591-23844668,23844740-23845024,
           23845139-23845225,23845365-23845415,23845625-23845761,
           23845853-23846437
          Length = 702

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 222 GYDRVTCRHPWISLISPSADSNNDSVLPPLERSVNSILPLMCVQPRNCSAVATESI 55
           G D +T    W   I P +   N+ +LPP++ +V     LMCV    C  +   SI
Sbjct: 266 GLDVLTGNISWQQTIGPLS---NEKILPPVDSNVVFGFGLMCVLISGCIHLHIHSI 318


>07_03_0588 -
           19715677-19715754,19715843-19715942,19716170-19716297,
           19716385-19716552,19716623-19716735,19716820-19716972,
           19717082-19717225,19718710-19719427
          Length = 533

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 330 MGLVHLRTYRDNR*LLHTFESQAVLHSTDAAYEYVVSENEFYR 458
           MG++H R  +    LL T E  A+L +TD      + E + YR
Sbjct: 203 MGVMH-RDLKPENFLLATKEENAMLKATDFGLSVFIEEGKMYR 244


>05_04_0259 + 19494629-19495394,19495408-19495949
          Length = 435

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 588 RMSSDSTHPKLVPLRFA-LTPTRSASGRRETRCLIPV 481
           R+   ST P LV L F  L+P R+ASG   +  L+PV
Sbjct: 7   RLVLASTAPVLVLLLFVPLSPCRAASGSSPSAVLLPV 43


>01_01_1046 - 8246740-8247504
          Length = 254

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -1

Query: 475 LGTLLVR*NSFSDTTYS*AASVECSTAWDSNVCSSYRLSL*VRKWTSPIAALD 317
           +G  + R   FS T    +  + C  A+ S+ C  +     V +W  P+  +D
Sbjct: 21  IGRTIFRSQDFSGTCRRDSYCIRCGVAFCSHCCRYHHRHAAVSRWYDPLLRVD 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,827,116
Number of Sequences: 37544
Number of extensions: 301319
Number of successful extensions: 909
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)