Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0253
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)               61   8e-10
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_42318| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   9.0  
SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)                27   9.0  
SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)          27   9.0  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    27   9.0  

>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 29/70 (41%), Positives = 40/70 (57%)
 Frame = +2

Query: 47  GGKIDSVATAEQFRGCTHIKGKMEFTLRSSGGKTLSLLESALGEIREIHGCLQVTRSYPL 226
           GG IDS+++   ++GCT IKG +E  LR  G      LE  LG I  + G + +  S  +
Sbjct: 263 GGIIDSISSLRHYKGCTDIKGNLEIKLRGGGQTIAKELEDNLGMIERVTGYIVIRESVAI 322

Query: 227 VSLMFLKKLR 256
           V+L FLK LR
Sbjct: 323 VTLKFLKNLR 332



 Score = 32.7 bits (71), Expect = 0.24
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 337 WSTYGPIEII-GSCYIHSNPKLCYTQLMPLMNMSYPKTNFT---ELEVSQDSNGYQASC 501
           W     ++I  G   +  NP+LC  ++ PL+N     TN +    ++VSQ SNG   +C
Sbjct: 370 WDFRSDLQITAGGILVRMNPRLCPGRIDPLVNDVLQWTNASLGRPVDVSQTSNGNAVAC 428


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 352  PIEIIGSCYIHSNPKLCYTQLMPL 423
            P+E + SC  H  P+ C+T L+P+
Sbjct: 1196 PVECLSSCKPHCPPRCCFTVLIPI 1219


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -2

Query: 180  ISPSADSNNDSVLPPLERSVNSILPLMCVQPRNCSAVATESIFPPRHSRTQAGTAGTG 7
            ++ SA     +V P  + +++S L      P + +A+    + PP  S TQA    +G
Sbjct: 1761 VASSASFRAQTVAPITQPALSSPLVAQSAPPNSQAALPVAPVIPPAQSTTQASQPVSG 1818


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 384 FESQAVLHSTDAAYEYVVSENEFYRTRSVPRQQRVSGILSPGVLKLSVSELTQIAVVLTW 563
           FE+  ++HST A  EY+ + N   RT      + +S   +P       S +   A VL W
Sbjct: 663 FEAWCMMHSTPAQLEYLQTLN---RTLQALVYEELSRTFAPASQDADHSSMLD-AGVLGW 718

Query: 564 --DVYC 575
             DVYC
Sbjct: 719 MFDVYC 724


>SB_42318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 289 EALHXXXXXXXXXXWDWSTYGPIEIIGSCYIH 384
           E +H          W W     +EI G CY+H
Sbjct: 306 EPIHARGIRFIAQSWKWHISFRVEIYGRCYLH 337


>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 672

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 492 GILSPGVLKLSVSELTQIAVVLTW 563
           G ++PG++ LSV+   QI  VLTW
Sbjct: 351 GRIAPGLVGLSVAYALQITGVLTW 374


>SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)
          Length = 552

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = -2

Query: 264 DNFLSFFKNINDTKGYDRVTCRHPWISLISPSADSNNDSVLPPLERSV 121
           + FLS F++ N   GY RVT   P I   SP     + S LPP ER++
Sbjct: 72  ERFLSAFQD-NRQSGYGRVTLDSPEIQRNSP-VQFESYSSLPP-ERAI 116


>SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)
          Length = 634

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 152 SLLESAL-GEIREIHGCLQVTRSYPLVSLMFLK 247
           S++ESA  G++ +IH   Q +R  PL S+ +LK
Sbjct: 139 SIIESAKKGKVGQIHMIKQTSRDSPLPSMEYLK 171


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -2

Query: 210 VTCRHPWISLISPSADSNNDSVLPPLER 127
           VTC     SLIS SAD+ N S   PL+R
Sbjct: 562 VTCTTGRASLISFSADNKNPSYAVPLKR 589


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,155,207
Number of Sequences: 59808
Number of extensions: 342411
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)