Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0253
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54269-4|CAA91021.1|  310|Caenorhabditis elegans Hypothetical pr...    32   0.37 
AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical ...    31   0.64 
AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z93397-4|CAB07721.1|  363|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL132876-24|CAE17987.1|  405|Caenorhabditis elegans Hypothetical...    28   6.0  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    27   7.9  

>Z54269-4|CAA91021.1|  310|Caenorhabditis elegans Hypothetical
           protein F02C12.4 protein.
          Length = 310

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 92  CTHIKGKMEFTLRSSGGKTLSLLESALGEIREIHGCLQVTRSYPLVSLMFLKKLRKLS 265
           CT I G + F     G   ++ L + L  + E++GC+QVT +     L F  +LR ++
Sbjct: 44  CTRISGSILF----GGSDAINTLYAKLAYVEEVNGCIQVTGT-SYTRLDFFARLRSVT 96


>AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical
           protein Y44A6D.3 protein.
          Length = 229

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 600 PSSLRMSSDSTHPKLVPLRFALTPTRSASGRRETRCLIPVAV 475
           PSS+  SS +  P   P+     PT S SGRR+ RC + + V
Sbjct: 175 PSSISSSSSTPPPSTSPV-----PTSSGSGRRKPRCPMKIVV 211


>AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical
           protein Y46H3D.4 protein.
          Length = 517

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +2

Query: 35  RECLGGKIDSVATAE--QFRGCTHIKGKMEFTLRSSGGKTLSLLESALGEIREIHGCLQV 208
           + C G   D + + E  +FRGCT I   M F   +       +  S L +I+ I GCL  
Sbjct: 168 KNCKGCVSDQLHSTELDKFRGCTAIVNTMFFMFFNVYTTQPPIDLSPLSDIQNISGCLNF 227

Query: 209 TRSYPLVSLMFLKKLRKL 262
             S  L    F +KL  +
Sbjct: 228 -YSTDLHDFSFFEKLENI 244


>AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical
           protein F32D1.1 protein.
          Length = 594

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = -2

Query: 174 PSADSNNDSVLPPLERSVNSILPLMCVQPRNCSAVATESIF----PPRHSRTQ 28
           P    NND + PP   + N I P    +PR    V T S      PP  SR+Q
Sbjct: 19  PETGENNDDLYPPTALARNGISPYFIGKPRRKIVVETPSDSAQQQPPFKSRSQ 71


>Z93397-4|CAB07721.1|  363|Caenorhabditis elegans Hypothetical
           protein ZC482.7 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +2

Query: 32  VRECLGGKIDSVATAEQFRGCTHIKGKMEFTLRSSGGKTLSLLESALGEIREIHGCLQVT 211
           +  C GG   S++  EQ+  C  + G +E T  S     +S L S L  I  + G + + 
Sbjct: 35  IPRCQGGTWQSISAPEQYETCNTLYGGLEITSTSD----ISNLRS-LRNIITVEGLINIE 89

Query: 212 RSYPLVSLMFLKKLR 256
            +  L  L F + L+
Sbjct: 90  NT-NLQDLSFFQSLK 103


>Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical
           protein F01D5.3 protein.
          Length = 132

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 564 DVYCPTTCASCSDTS 608
           DV+CP TC  CSD++
Sbjct: 49  DVFCPKTCGLCSDST 63


>AL132876-24|CAE17987.1|  405|Caenorhabditis elegans Hypothetical
           protein Y105E8A.29 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 505 GDKMPDTRCCLGTLLVR*NSFSDTTYS*AASVECSTAWDSNVCSSYRLSL 356
           GD+ PD+R    + L   +S S  T   AA +       S +C ++RLS+
Sbjct: 47  GDETPDSRYSTSSRLYENHSISSPTALLAAELTDDLMPLSEICKNHRLSI 96


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 606 KYPSSLRMSSDSTHPKLVPLRFALTPTRSASGRRETRCL 490
           K+P+++    DSTH +L P+   +TP+ S     ET+ L
Sbjct: 277 KFPNTVHR--DSTHSELPPISRIITPSDSIPKATETQIL 313


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 606 KYPSSLRMSSDSTHPKLVPLRFALTPTRSASGRRETRCL 490
           K+P+++    DSTH +L P+   +TP+ S     ET+ L
Sbjct: 277 KFPNTVHR--DSTHSELPPISRIITPSDSIPKATETQIL 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,001,693
Number of Sequences: 27780
Number of extensions: 249813
Number of successful extensions: 806
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)