Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0253
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42190.1 68416.m04340 hypothetical protein 32 0.26
At2g01420.1 68415.m00062 auxin transport protein, putative simil... 30 1.4
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ... 30 1.4
At5g67340.1 68418.m08492 armadillo/beta-catenin repeat family pr... 29 1.8
At3g48195.1 68416.m05258 phox (PX) domain-containing protein con... 29 2.4
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 29 2.4
At5g03700.1 68418.m00330 PAN domain-containing protein contains ... 29 3.2
At2g16450.1 68415.m01884 F-box family protein contains Pfam PF00... 28 5.6
At2g07680.1 68415.m00992 ABC transporter family protein 28 5.6
At1g31000.1 68414.m03796 F-box family protein contains F-box dom... 28 5.6
>At3g42190.1 68416.m04340 hypothetical protein
Length = 695
Score = 32.3 bits (70), Expect = 0.26
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -2
Query: 258 FLSFFKNINDTKGYDRVTCRHPWISLISPSAD--SNNDSVLPPLERSVNSILPLMCVQPR 85
F S + N Y V H SL++ + S N+S+L P E ++N + C QP
Sbjct: 414 FQSAAEKGNSESNYASVKVTHTPASLVNEVGEIVSVNESILSPKESTINEESQIQCAQPT 473
Query: 84 NCSAVATESIFPPR 43
+ V ++ R
Sbjct: 474 SGDGVHLSNVVEER 487
>At2g01420.1 68415.m00062 auxin transport protein, putative similar
to auxin transport protein PIN7[Arabidopsis thaliana]
gi|5817305|gb|AAD52697
Length = 612
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 47 GGKIDSVATAEQFRGCTHIKGKMEFTLRSSGGKTLSLLESALGEIREI 190
GG D+VAT + +G I+ + R SGG + L+S GE REI
Sbjct: 366 GGAGDNVATEQSEQGAKEIRMVVSDQPRKSGGDDIGGLDSGEGE-REI 412
>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 195 PWISLISPSADSNNDSVLPPLERSVNS 115
PW+ +P+ + NN ++ PP+ SVN+
Sbjct: 284 PWLISSNPNPNGNNGNLFPPVASSVNT 310
>At5g67340.1 68418.m08492 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 707
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 132 ERSVNSILPLMCVQPRNCSAVATESIFPPRHSRTQAGTA 16
E + ++L L P+ C+ V E + PP + T++GTA
Sbjct: 645 ENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTA 683
>At3g48195.1 68416.m05258 phox (PX) domain-containing protein
contains Pfam profile PF00787: PX domain
Length = 938
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 331 WDWSTYGPIEIIGSCY---IHSNPKLCYTQLMPLMNMSYPKTN 450
WD++ Y P+ + Y IH P LC + + P ++ P N
Sbjct: 710 WDFNRY-PVSQLAKSYLDSIHEQPMLCVSAVNPFLSSKVPALN 751
>At1g58230.1 68414.m06618 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to Lipopolysaccharide-responsive and
beige-like anchor protein (CDC4-like protein)
(Beige-like protein) (SP:P50851) [Homo sapiens}
Length = 1280
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 473 KTATGIRHLVSRRPEAERVGVNANRSGTNLGCVLSDDMRKLLGY 604
+T++G++ +V + +A + V + T++ CVL RKL G+
Sbjct: 417 RTSSGLKDVVQDKVDASSLEVGTSEVLTSVPCVLVTPKRKLAGW 460
>At5g03700.1 68418.m00330 PAN domain-containing protein contains
Pfam profile: PF00024 PAN domain
Length = 482
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 588 RMSSDSTHPKLVPLRFALTPTRSASGRRETR 496
R+S THP L + L PTRSAS +T+
Sbjct: 75 RLSLAVTHPNLTDPLWVLDPTRSASWSHKTK 105
>At2g16450.1 68415.m01884 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 427
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 120 SRFAPAEVRRYHCWNQRWA 176
SR VRR+HC ++RWA
Sbjct: 16 SRLPAKSVRRFHCVSKRWA 34
>At2g07680.1 68415.m00992 ABC transporter family protein
Length = 1194
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 104 KGKMEFTLRSSGGKTLSLLESALGEIREIHGCLQVTRSYPLV 229
KG + G SLL S LGE+R +HG + + S V
Sbjct: 378 KGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYV 419
>At1g31000.1 68414.m03796 F-box family protein contains F-box domain
Pfam:PF00646
Length = 363
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -2
Query: 306 YYMQSFPFIF*RIRDNFLSFFKNINDTKGYDR 211
Y+++SFPF+F I+ + L +++ KG+ +
Sbjct: 53 YFIRSFPFLFSSIQPHLLYALNSLDKDKGHHK 84
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,569
Number of Sequences: 28952
Number of extensions: 235055
Number of successful extensions: 700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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