Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0252
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   3.6  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   3.6  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   4.7  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    25   6.2  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   8.3  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 147  VLLSRIAWNLWVYGGTSVLSVFYTAWSLGNALRNYSDDSL 266
            VLL++I  NLW+  G S+L        L N   +Y  D L
Sbjct: 903  VLLAQIDCNLWIRNGRSILLTDAFYRQLNNIEVSYDKDIL 942


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 15  KDLRFIRRRSDLAWSTALTSGPGLPNTSYFHLTPYRNGLFGWSIV 149
           +++R +RR SDL+    L S  G   +S   LTP       W +V
Sbjct: 70  QEVRGMRRHSDLSIDAKLGSSEGSTASSALPLTPRSPSNASWLLV 114


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 508  LHERRGPLTIRWAGCSSVYQGNKKKKKK 591
            +HE+R PL I +   +++Y+ N+ +  K
Sbjct: 1836 VHEKRSPLAISYLDAANMYRSNEDEGTK 1863


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 144 STIRTARFCMESNGSSW-YLGAPAQR*EQYS-TRGRTCAL*SASL 16
           S+IR A FC   N SSW  + A     E YS    R C + SA++
Sbjct: 11  SSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANI 55


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 248 IPQSIPQGPCGIK 210
           +PQSIP GP G+K
Sbjct: 265 VPQSIPSGPMGMK 277


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = -1

Query: 507 SAMPGAEPSRLPTIKYSPQAWFEEAHVIAL 418
           SA+P  E  ++  ++++PQ  F+  +++A+
Sbjct: 411 SALPPHESQKVTVVRWNPQLPFDHTNLVAM 440


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 FHLTPYRNGLFGWSIVLLSRIAWNLW-VYGGTSVLSVF 212
           FHL P    LF W+I+  S +  N++ +     +LSV+
Sbjct: 47  FHLVPNALFLFPWTIITTSFVDANVFTLLSSILILSVY 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,912
Number of Sequences: 5004
Number of extensions: 56839
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)