Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0252
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767... 32 0.30
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 29 2.1
05_06_0230 + 26585439-26586608 29 2.8
02_05_1198 + 34918953-34919026,34919151-34919370,34919462-34919587 28 6.4
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 27 8.5
10_08_0134 + 15107411-15107939,15108049-15108124,15108332-151084... 27 8.5
09_04_0507 + 18194320-18195081 27 8.5
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 8.5
>11_02_0042 -
7672565-7672729,7672902-7672977,7673409-7674132,
7674684-7674708,7675041-7675486,7676643-7676862,
7677609-7678459,7678697-7679555
Length = 1121
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 296 IGAEFIHIIWNRCVHRQCVTKDLFCHVPSGFGMNSPPRSFPSAMTCAS--SNQACG 457
+G F+ N + R+ + H P G G S R F +A++C + N+ CG
Sbjct: 350 VGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALSCVAIGENKPCG 405
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 371 HVPSGFGMNSPPRSFPSAMTCASS--NQACG 457
H P G G S R F +++ C SS NQ CG
Sbjct: 189 HGPHGIGKTSAARIFAASLNCHSSGGNQPCG 219
>05_06_0230 + 26585439-26586608
Length = 389
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 537 DGKWSPSFMESAMPGAEPSRLPTIKYSPQAW 445
+GKWS + +S + PSR P+I YSP W
Sbjct: 357 NGKWSGAPADSRVDRCFPSRGPSI-YSPPVW 386
>02_05_1198 + 34918953-34919026,34919151-34919370,34919462-34919587
Length = 139
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 441 EEAH--VIALGKLRGGEFIPKPDGTWQKRSL 355
EEAH V A LRGG + P PD T+ + L
Sbjct: 70 EEAHQPVAAAATLRGGAYYPAPDLTFIAKGL 100
>12_02_0953 -
24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 89 WEPRPRGESSTPREVGPAPYKA 24
W P PRGE P VG PY A
Sbjct: 110 WVP-PRGEEQPPPRVGGTPYSA 130
>10_08_0134 +
15107411-15107939,15108049-15108124,15108332-15108459,
15108960-15109037,15109734-15110263
Length = 446
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 3 SRLDKDLRFIRRRSDLAWSTALTSGPGLPNTSYF 104
SRL +DL FI+ S L W + P + +T+ +
Sbjct: 183 SRLPRDLNFIQHTSHLGWKIKKRARPVILDTALY 216
>09_04_0507 + 18194320-18195081
Length = 253
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = +2
Query: 398 SPPRSFPSAMTCASSNQACGEYFMVGKRLGSAPGIADSMNDGDHLPSGGPDARLSTKA 571
SP + P+ A + + E SAPG ++ + P+G PDA A
Sbjct: 97 SPAATAPAGAAAAPAEEGDEEEDASTASPASAPGASEEAEGEEEAPAGAPDAEAEEAA 154
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 246 SSEHSPR--TMRYKTQREPKSLRRPRGSKRSARAGLSTIRTAR 124
S SPR + + R P+ R PRGS R +R+ + R +R
Sbjct: 165 SRSQSPRRDSRNERRSRSPRDSRSPRGSPRDSRSPRGSPRDSR 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,847,122
Number of Sequences: 37544
Number of extensions: 437166
Number of successful extensions: 1262
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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