Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0252
         (591 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U69263-1|AAC51260.2|  956|Homo sapiens matrilin-2 precursor prot...    29   9.3  
BC016394-1|AAH16394.1|  715|Homo sapiens MATN2 protein protein.        29   9.3  
BC010444-1|AAH10444.1|  937|Homo sapiens matrilin 2 protein.           29   9.3  
AY576779-1|AAT39521.1|  860|Homo sapiens nucleolar protein with ...    29   9.3  
AL833931-1|CAD38787.1| 1016|Homo sapiens hypothetical protein pr...    29   9.3  
AK075489-1|BAC11648.1|  451|Homo sapiens rase 7.  protein.             29   9.3  

>U69263-1|AAC51260.2|  956|Homo sapiens matrilin-2 precursor
           protein.
          Length = 956

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 332 CVHRQCVTKD--LFCHVPSGFGMNSPPRSFPSAMTCASSNQAC 454
           C H +CV  D    C    GF +N   ++      CASSN  C
Sbjct: 331 CEH-ECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGC 372


>BC016394-1|AAH16394.1|  715|Homo sapiens MATN2 protein protein.
          Length = 715

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 332 CVHRQCVTKD--LFCHVPSGFGMNSPPRSFPSAMTCASSNQAC 454
           C H +CV  D    C    GF +N   ++      CASSN  C
Sbjct: 90  CEH-ECVNADGSYLCQCHEGFALNPDEKTCTKIDYCASSNHGC 131


>BC010444-1|AAH10444.1|  937|Homo sapiens matrilin 2 protein.
          Length = 937

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 332 CVHRQCVTKD--LFCHVPSGFGMNSPPRSFPSAMTCASSNQAC 454
           C H +CV  D    C    GF +N   ++      CASSN  C
Sbjct: 331 CEH-ECVNADGSYLCQCHEGFALNPDEKTCTKIDYCASSNHGC 372


>AY576779-1|AAT39521.1|  860|Homo sapiens nucleolar protein with
           MIF4G domain 1 protein.
          Length = 860

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 20/93 (21%), Positives = 38/93 (40%)
 Frame = -1

Query: 408 RGGEFIPKPDGTWQKRSLVTHCR*TQRFQIIWMNSAPMAGGAMIKRR*GNHQNNSSEHSP 229
           RG     +P G   ++ L    R  ++ + +   + P  G  +  R      +   + + 
Sbjct: 68  RGAPVSFRPGGRKSRKELRKEKRHLRKARRLQRTAGPEQGPGLGGRSGAEEASGHRQDTE 127

Query: 228 RTMRYKTQREPKSLRRPRGSKRSARAGLSTIRT 130
              R    R+P   R+PR S+  A+A  +T +T
Sbjct: 128 ERARPAPSRDPSPPRKPRPSRVKAKATAATAKT 160


>AL833931-1|CAD38787.1| 1016|Homo sapiens hypothetical protein
           protein.
          Length = 1016

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 332 CVHRQCVTKD--LFCHVPSGFGMNSPPRSFPSAMTCASSNQAC 454
           C H +CV  D    C    GF +N   ++      CASSN  C
Sbjct: 391 CEH-ECVNADGSYLCQCHEGFALNPDEKTCTKIDYCASSNHGC 432


>AK075489-1|BAC11648.1|  451|Homo sapiens rase 7.  protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 332 CVHRQCVTKD--LFCHVPSGFGMNSPPRSFPSAMTCASSNQAC 454
           C H +CV  D    C    GF +N   ++      CASSN  C
Sbjct: 331 CEH-ECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGC 372


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,480,535
Number of Sequences: 237096
Number of extensions: 2415912
Number of successful extensions: 10326
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10325
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)