Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0252
         (591 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003208-1|AAO24963.1|  478|Drosophila melanogaster SD23764p pro...    29   6.2  
AE013599-1621|AAF58436.2|  478|Drosophila melanogaster CG3884-PA...    29   6.2  
BT024291-1|ABC86353.1|  638|Drosophila melanogaster IP12935p pro...    28   8.2  
AE014298-1809|AAF48200.3|  681|Drosophila melanogaster CG12717-P...    28   8.2  

>BT003208-1|AAO24963.1|  478|Drosophila melanogaster SD23764p
           protein.
          Length = 478

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 338 HRQCVTKDLFCHVPSGFGMNSPPRSFPSAMTCASSNQACGEYFMVGKRLGS-APGIADSM 514
           ++  V K  +  VPS +G N PP     A+   ++      Y   G   GS  PG+ ++ 
Sbjct: 387 YQMLVGKGKYHWVPS-YGGNVPP----GAVVAGTTPGGAPLYIGRGHYCGSLTPGVIETY 441

Query: 515 NDGDHLPSGGPDARLS 562
           N    +P GG + RLS
Sbjct: 442 NRCLQIPFGGQEIRLS 457


>AE013599-1621|AAF58436.2|  478|Drosophila melanogaster CG3884-PA,
           isoform A protein.
          Length = 478

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 338 HRQCVTKDLFCHVPSGFGMNSPPRSFPSAMTCASSNQACGEYFMVGKRLGS-APGIADSM 514
           ++  V K  +  VPS +G N PP     A+   ++      Y   G   GS  PG+ ++ 
Sbjct: 387 YQMLVGKGKYHWVPS-YGGNVPP----GAVVAGTTPGGAPLYIGRGHYCGSLTPGVIETY 441

Query: 515 NDGDHLPSGGPDARLS 562
           N    +P GG + RLS
Sbjct: 442 NRCLQIPFGGQEIRLS 457


>BT024291-1|ABC86353.1|  638|Drosophila melanogaster IP12935p
           protein.
          Length = 638

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 395 NSPPRSFPSAMTCASSNQACGEYFMVGKRLGSAP-GIADSMNDGDHLPSGGPDARLSTKA 571
           +SP    PS    A++          GK+   +P G     NDG  + S   DA  +TKA
Sbjct: 100 HSPAVVKPSETAVANNGCQPAASATKGKKHKKSPCGSPGENNDGQVILSADQDANTNTKA 159

Query: 572 IKKKK 586
            K+KK
Sbjct: 160 KKQKK 164


>AE014298-1809|AAF48200.3|  681|Drosophila melanogaster CG12717-PA
           protein.
          Length = 681

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 395 NSPPRSFPSAMTCASSNQACGEYFMVGKRLGSAP-GIADSMNDGDHLPSGGPDARLSTKA 571
           +SP    PS    A++          GK+   +P G     NDG  + S   DA  +TKA
Sbjct: 143 HSPAVVKPSETAVANNGCQPAASATKGKKHKKSPCGSPGENNDGQVILSADQDANTNTKA 202

Query: 572 IKKKK 586
            K+KK
Sbjct: 203 KKQKK 207


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,830,753
Number of Sequences: 53049
Number of extensions: 675187
Number of successful extensions: 2128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2128
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)