Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0252
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   2.5  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.5  
Z47811-3|CAA87787.2|  723|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF489839-1|AAN09795.1|  723|Caenorhabditis elegans lim and trans...    28   4.3  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear recep...    27   7.5  
AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormo...    27   7.5  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    27   10.0 

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 323  WNRCVHRQCVTKDLFCHVPSGFGMNSPPRSFPSAMTCASSNQAC 454
            +N C +R+C+     C+     G  S     PSA+ CA     C
Sbjct: 2838 YNLCTNRRCIDSAKKCNHIDDCGDGSDELDCPSAVACAEGTFPC 2881


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 549  SGPPDGKWSPSFMESAMPGAEPSRLPT 469
            S PP  ++SP    +  P ++P+RLPT
Sbjct: 1330 SQPPSSQYSPPVFAAPPPPSQPTRLPT 1356


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 323  WNRCVHRQCVTKDLFCHVPSGFGMNSPPRSFPSAMTCASSNQAC 454
            +N C +R+C+     C+     G  S     PSA+ CA     C
Sbjct: 2838 YNLCTNRRCIDSAKKCNHIDDCGDGSDELDCPSAVACAEGTFPC 2881


>Z47811-3|CAA87787.2|  723|Caenorhabditis elegans Hypothetical
           protein K02C4.4 protein.
          Length = 723

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = -3

Query: 427 HSARKTPWRGVHSKAGWYVAKKIFGNALSMNAAVPDNMDELCSDGG---RCDDKKEMRES 257
           H  R T W  V     W   +  +G    +NA   D   E  +DG      DD   M +S
Sbjct: 387 HRFRNT-WNAVFLDGSWRFVQCNWGARHLVNAK--DGSHEAKTDGNLRYEYDDHYFMTDS 443

Query: 256 SE*FLRAFPKDHA 218
            E     FP DHA
Sbjct: 444 EEFIYEFFPSDHA 456


>AF489839-1|AAN09795.1|  723|Caenorhabditis elegans lim and
           transglutaminase domainprotein protein.
          Length = 723

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = -3

Query: 427 HSARKTPWRGVHSKAGWYVAKKIFGNALSMNAAVPDNMDELCSDGG---RCDDKKEMRES 257
           H  R T W  V     W   +  +G    +NA   D   E  +DG      DD   M +S
Sbjct: 387 HRFRNT-WNAVFLDGSWRFVQCNWGARHLVNAK--DGSHEAKTDGNLRYEYDDHYFMTDS 443

Query: 256 SE*FLRAFPKDHA 218
            E     FP DHA
Sbjct: 444 EEFIYEFFPSDHA 456


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 323 WNRCVHRQCVTKDLFCH 373
           W+RCVH  CV   +F H
Sbjct: 12  WSRCVHPSCVAWVIFIH 28


>AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear receptor
           NHR-124 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 394 HSKAGWYVAKKIFGNALSM--NAAVPDNMDELCSDGGRCDDKKEMRES 257
           H KA  Y  + +  NA  M    A  + +D+ C  GG+C D  ++  S
Sbjct: 18  HQKAFGYNYEVVSCNACKMFFRRAHAEKIDDFCKKGGKCFDGDDLLTS 65


>AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 124 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 394 HSKAGWYVAKKIFGNALSM--NAAVPDNMDELCSDGGRCDDKKEMRES 257
           H KA  Y  + +  NA  M    A  + +D+ C  GG+C D  ++  S
Sbjct: 18  HQKAFGYNYEVVSCNACKMFFRRAHAEKIDDFCKKGGKCFDGDDLLTS 65


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 376 YVAKKIFGNALSMNAAVPDNMDELCSDGGRCDD 278
           +   K+  +  +MN  +P ++DE  + GG+CD+
Sbjct: 181 FTIPKVPKHNATMNRTIPMDLDESKAAGGQCDE 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,681
Number of Sequences: 27780
Number of extensions: 339884
Number of successful extensions: 992
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)