Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0252
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   1.7  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   6.8  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   6.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   6.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   6.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   6.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.0  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 471 TIKYSP-QAWFEEAHVIALGKLRGGEFIPKPDGTWQKR 361
           TI  +P + W+E  +V+ LG+ RG +     +    K+
Sbjct: 103 TIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKK 140


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 402 GEFIPKPDGTW 370
           G F+P+P G W
Sbjct: 124 GNFLPRPMGPW 134


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 402 GEFIPKPDGTW 370
           G F+P+P G W
Sbjct: 127 GNFLPRPMGPW 137


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 402 GEFIPKPDGTW 370
           G F+P+P G W
Sbjct: 127 GNFLPRPMGPW 137


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 402 GEFIPKPDGTW 370
           G F+P+P G W
Sbjct: 127 GNFLPRPMGPW 137


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 402 GEFIPKPDGTW 370
           G F+P+P G W
Sbjct: 127 GNFLPRPMGPW 137


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 269 DEGIIRIIPQSIPQGPCGIK 210
           D+  I +I Q +P+ P G+K
Sbjct: 864 DDTSINMIVQEVPEVPYGLK 883


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 271 PFYHRTSRHRSRVHPY 318
           P YH    H S+ HP+
Sbjct: 314 PSYHPHQHHPSQYHPH 329


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 261 NHQNNSSEHSPRTMRY 214
           +HQ++SSEH+    R+
Sbjct: 106 HHQDSSSEHASNQERF 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,445
Number of Sequences: 438
Number of extensions: 4328
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)