Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0252
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25430.1 68418.m03019 anion exchange protein family contains ... 29 1.8
At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase fam... 29 1.8
At2g30200.1 68415.m03672 expressed protein 29 1.8
At3g22380.1 68416.m02825 expressed protein 29 3.1
At1g70340.1 68414.m08092 expressed protein 29 3.1
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina... 28 5.4
At3g50200.1 68416.m05489 expressed protein ; expression supporte... 27 7.1
At1g41830.1 68414.m04829 multi-copper oxidase type I family prot... 27 7.1
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar... 27 7.1
At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family... 27 9.4
At4g06744.1 68417.m01106 leucine-rich repeat family protein / ex... 27 9.4
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.4
>At5g25430.1 68418.m03019 anion exchange protein family contains
similarity to SWISS-PROT:P02730 anion transport protein
(Anion exchange protein 1) [Human]{Homo sapiens}
Length = 641
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 424 YDMCFFKPGLRRVLYGRQAAWLCPW 498
Y C +P + R LY AW+C W
Sbjct: 79 YSFCISRPDIGRELYLAWVAWVCVW 103
>At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains non-consensus AT
donor splice site at exon 1 and non-consensus AC
acceptor splice site at exon 2
Length = 443
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +1
Query: 235 ML*GIILMIPSSPFYHRTSRHRSRVHPYYLEPLRSSTVRYQRSFLPRTIRLWNELPSTEF 414
+L GI + + ++S H+ PY ++PL +R + S+LP TI ++ PS E+
Sbjct: 47 VLVGIAIATLGFTIFSKSSNHQPI--PYDVDPLSGYGMRSESSYLPATI---HKKPSIEY 101
Query: 415 SER 423
R
Sbjct: 102 MSR 104
>At2g30200.1 68415.m03672 expressed protein
Length = 393
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 30 IRRRSDLAWSTALTSGPGLPNTSYFHLTPYRNGLFGWSIVLLSRIAWNLWVYGGTSVLSV 209
IRR S A +T +S LP+ S +L+ +N FG++ LSR ++ V G+ +V
Sbjct: 19 IRRTSLSAMATTASSSLLLPSISLNNLSSSKNASFGFAAKNLSRSRISMSVSAGSQSTTV 78
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = -1
Query: 552 ASGPPDGKWSPSFMESAMPGAEPSRLPTIKYSPQAWFEEAHVIALGKLRGGEFIPKP 382
AS P G + SF AMPG E L ++ + + AHV A RG P P
Sbjct: 801 ASATPAGAPTMSFSYPAMPGNETQYLAILQNNGYPFPVPAHVGAQPAYRGAPGQPMP 857
>At1g70340.1 68414.m08092 expressed protein
Length = 510
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 261 NHQNNSSEHSPRTMRYKTQREPKSLRRPRGSKRSARAGLS-TIRTARFCMESNGSSWYL 88
N + S R + K Q E K++R +K A G+S TIR A+ +E ++W++
Sbjct: 383 NSIDQEKRRSKRRIVLKQQSEGKTVRSNDENKNPASGGISNTIRLAKE-IEDEAANWFM 440
>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118: TCP-1/cpn60
chaperonin family
Length = 1756
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +2
Query: 23 ALYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQKRAVRMVDSPALADRLEPLGLRRDFGS 202
+LY + R+ + G KY + + + + A+RM+ P+ D + LG R +G+
Sbjct: 1434 SLYLKDLHARISFTDEGPPGKVKYSVTCYYAKEFEALRMICCPSETDFIRSLGRCRKWGA 1493
>At3g50200.1 68416.m05489 expressed protein ; expression supported
by MPSS
Length = 231
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 158 REQDYRPSEQPVSVWSQMEVAGIWEPRPRGES 63
++QDY+ EQ SV+ ++EV G G+S
Sbjct: 57 QDQDYKSQEQTCSVFCEIEVIGERSEETTGDS 88
>At1g41830.1 68414.m04829 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 542
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -1
Query: 585 FFFFIALVDRRASGPPDGKWSPSFMESAMPGAEPSRLPTIKYSPQAWFEEAHVIALGKLR 406
F++F +L +A+G G S +P A+P+ T+ W++ H +L
Sbjct: 125 FYYFPSLAFHKAAGGFGGIRILSRPGIPVPFADPAGDYTVLIGD--WYKFNHTDLKSRLD 182
Query: 405 GGEFIPKPDG 376
G +P PDG
Sbjct: 183 RGRKLPSPDG 192
>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
receptor-like protein kinase (Ipomoea nil) (U77888)
Length = 1029
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 406 WRGVHSKAGWYVAKKIFGNALSMNAAVPDNMDELCS 299
W GVH A YVAK + N ++++ V D + S
Sbjct: 68 WTGVHCDANGYVAKLLLSN-MNLSGNVSDQIQSFPS 102
>At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; similar to hydroxyproline-rich
Glycoprotein (HRGP) [Zea mays] gi|4007865|emb|CAA10387
Length = 343
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 355 QRSFLPRTIRLWNELPSTEFSER--YDMCFFKPGLRRV 462
+RS++ R + + + P TEF++ C F PG++ +
Sbjct: 291 RRSYMRRAVEMRKQNPYTEFTKNGADSCCLFVPGIKMI 328
>At4g06744.1 68417.m01106 leucine-rich repeat family protein /
extensin family protein similar to leucine-rich
repeat/extensin 1 (GI:13809918) {Arabidopsis thaliana};
contains Pfam PF00560: Leucine Rich Repeat domains
Length = 404
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 2 FTPGQRLALYKAQ--VRPRVEYCSHLW 76
F PGQR A+ V+P+ YC H+W
Sbjct: 350 FFPGQRSMQECAEFFVKPKKYYCPHMW 376
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 278 IIAPPAIGAEFIHIIWNRCVHRQCVTKDLFC 370
++A PAIGA + H WN + C + C
Sbjct: 339 VLAHPAIGAFWTHCGWNSTLESICEGVPMIC 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,729
Number of Sequences: 28952
Number of extensions: 323674
Number of successful extensions: 1011
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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