Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0251
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          28   0.057
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    25   0.53 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.2  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   1.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 28.3 bits (60), Expect = 0.057
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 388 ESTPYGSVDRSSPPSLPSNRCGSRNRS--TTSLAPPLYTGSASKR 260
           ES  Y S++ ++PP  P  R  S   +  T S  PPLY    +KR
Sbjct: 719 ESISYLSMENNAPPPPPPPRVESFAETVRTVSKIPPLYKDLVAKR 763


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 622 CPKAFFQPWFL 590
           CPKAF +PW L
Sbjct: 13  CPKAFSRPWLL 23


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 447 LLHTVGDSRVHGGTTRTIRCCVQVLTDVHVALHDGVICGLVDAASFIPKN 596
           L  T     +HGGTT TI    Q      + +  GVI G+  A  F+ +N
Sbjct: 41  LSETTAPRSIHGGTTVTI-TATQTGESEMMVVTSGVIPGV--AVDFLGEN 87


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 363 STDPYGVLSLWRSNDLN 413
           + DPYG+++ W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 343 LPSNRCGSRNRSTTSLAPPLYTGSA 269
           LP++RC SR  S + + P   +G +
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSGES 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,793
Number of Sequences: 336
Number of extensions: 3557
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)