Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0251
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 203 1e-53
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 91 2e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 87 2e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 87 3e-18
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 73 3e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 52 7e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 49 7e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 48 9e-07
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 42 6e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.3
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 2.3
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 27 3.0
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 3.0
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 26 5.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.3
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.3
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 25 7.0
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 9.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 203 bits (496), Expect = 1e-53
Identities = 93/123 (75%), Positives = 101/123 (82%)
Frame = -2
Query: 635 QKIRLPKGFLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADR 456
++ R P+ G E GIHE TYNSIMKCDV+IRKDLY GGTTMYPGIADR
Sbjct: 253 ERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADR 312
Query: 455 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 276
MQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+R
Sbjct: 313 MQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYR 372
Query: 275 KCF 267
KCF
Sbjct: 373 KCF 375
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 637 NKRFGCPKAFFQPWFLGMKLA 575
N+RF P+A FQP LG++ A
Sbjct: 252 NERFRAPEALFQPSALGLENA 272
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 90.6 bits (215), Expect = 2e-19
Identities = 41/110 (37%), Positives = 71/110 (64%)
Frame = -2
Query: 596 VFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADRMQKEITALAPSTM 417
+ G EA G+H + SI+ D+++R LY+ GG+T+ G +R E+ A++
Sbjct: 271 MMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKN 330
Query: 416 KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 267
++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 331 QVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 87.4 bits (207), Expect = 2e-18
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Frame = -2
Query: 575 GIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADRMQKEITALAP-STMKIKIIA 399
G+HE Y SI+ CD +R L GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 398 PPER-KYSVWIGGSILASLSTFQQMWISKQEYDESG 294
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 86.6 bits (205), Expect = 3e-18
Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 6/108 (5%)
Frame = -2
Query: 575 GIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 396
GI + N I +CDV+IR L GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 395 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 270
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 73.3 bits (172), Expect = 3e-14
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 12/118 (10%)
Frame = -2
Query: 611 FLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADRMQKEITAL 432
F P LV G E G+ E +++I DV+IRK LY GG++MY G+ R++KEI L
Sbjct: 262 FQPHLV-GSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQL 320
Query: 431 --------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 294
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 321 WFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 52.0 bits (119), Expect = 7e-08
Identities = 26/118 (22%), Positives = 54/118 (45%)
Frame = -2
Query: 635 QKIRLPKGFLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADR 456
++IR+P+ + G + GI E + + + + ++ L + GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 455 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 282
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.8 bits (111), Expect = 7e-07
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Frame = -2
Query: 566 ETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADRMQKEITALAPSTMK--------- 414
E N + +++RK LY GG+T++ +R+Q+++ + +
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAK 368
Query: 413 -----IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 276
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 369 SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 48.4 bits (110), Expect = 9e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Frame = -2
Query: 575 GIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 396
GI E S+ NI+ L GG +PG R+ E+ +LAP+ ++K+ P
Sbjct: 299 GIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEP 358
Query: 395 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 273
+ W S + L + I++ EY E G +I+ RK
Sbjct: 359 SDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 42.3 bits (95), Expect = 6e-05
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = -2
Query: 539 CDVNIR----KDLYATPYCPGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKY 381
CD N+ K+LY++ GG +PG A +++ I + + I +I PP + ++
Sbjct: 517 CDGNLSDEKAKNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQF 576
Query: 380 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 273
W G I + ++WI ++ G ++ K
Sbjct: 577 VAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 374 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 273
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 315 FRDPHLLEGREGGEDRSTDPYGVLSLWRS 401
F HLL + G+D + + YG LS W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -2
Query: 614 GFLPTLVFGYEACGIHETTYNSIMKCD--VNIRKDLYATPY 498
G++ LV GYE+ + + Y+++ +C+ + R L +T Y
Sbjct: 11 GYIEALVRGYESALLEQHIYSNLSQCESLEDFRLQLSSTDY 51
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 468 SRVHGGTTRTIRCCVQVLTDVHVALH 545
+R+ R RCC Q L D+H +H
Sbjct: 74 NRLEEAFCRDFRCCGQTLEDLHQLIH 99
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -1
Query: 501 VLSGWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREKVLRMDRWIDPRLPLYLPTDVD 322
VL WY PW + KG+ + +E + SSR + + W+D YL +++D
Sbjct: 480 VLGRWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEID 530
Query: 321 LETGV 307
+ + V
Sbjct: 531 MVSAV 535
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 382 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 287
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 449 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 339
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 477 HGGT-TRTIRCCVQVLTDVHVALHDGV-ICGLVDAASFIPKNQGWK 608
+GGT + I ++V+ V A+ D + + V A ++PK QGW+
Sbjct: 230 YGGTFEKRILFPMEVVHSVRKAIPDSMPLFYRVTATDWLPKGQGWE 275
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 565 SWMPQASYPKTRVGR 609
+W+ +ASY KT++GR
Sbjct: 298 TWLSKASYSKTKLGR 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,972
Number of Sequences: 5004
Number of extensions: 53539
Number of successful extensions: 177
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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