Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0251
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 215 3e-56
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 212 2e-55
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 212 2e-55
SB_56| Best HMM Match : Actin (HMM E-Value=0) 212 2e-55
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 212 2e-55
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 210 7e-55
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 185 3e-47
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 63 2e-10
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 62 3e-10
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_54| Best HMM Match : Actin (HMM E-Value=0) 36 0.021
SB_38989| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_665| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 215 bits (524), Expect = 3e-56
Identities = 99/123 (80%), Positives = 107/123 (86%)
Frame = -2
Query: 635 QKIRLPKGFLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADR 456
++ R P+ L G E+ GIHETTYNSIMKCDV+IRKDLYA GGTTMYPG+ADR
Sbjct: 227 ERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADR 286
Query: 455 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 276
MQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHR
Sbjct: 287 MQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHR 346
Query: 275 KCF 267
KCF
Sbjct: 347 KCF 349
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 637 NKRFGCPKAFFQPWFLGMK 581
N+RF CP+A QP FLGM+
Sbjct: 226 NERFRCPEALLQPSFLGME 244
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 212 bits (518), Expect = 2e-55
Identities = 98/123 (79%), Positives = 105/123 (85%)
Frame = -2
Query: 635 QKIRLPKGFLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADR 456
++ R P+ G E+ GIHETTYNSIMKCDV+IRKDLYA GGTTMYPGIADR
Sbjct: 216 ERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 275
Query: 455 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 276
MQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHR
Sbjct: 276 MQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHR 335
Query: 275 KCF 267
KCF
Sbjct: 336 KCF 338
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 637 NKRFGCPKAFFQPWFLGMKLA 575
N+RF CP+A FQP FLGM+ A
Sbjct: 215 NERFRCPEAMFQPSFLGMESA 235
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 212 bits (518), Expect = 2e-55
Identities = 98/123 (79%), Positives = 105/123 (85%)
Frame = -2
Query: 635 QKIRLPKGFLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADR 456
++ R P+ G E+ GIHETTYNSIMKCDV+IRKDLYA GG+TMYPGIADR
Sbjct: 254 ERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADR 313
Query: 455 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 276
MQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 373
Query: 275 KCF 267
KCF
Sbjct: 374 KCF 376
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 637 NKRFGCPKAFFQPWFLGMKLA 575
N+RF CP+A FQP FLGM+ A
Sbjct: 253 NERFRCPEAMFQPSFLGMESA 273
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 212 bits (518), Expect = 2e-55
Identities = 98/123 (79%), Positives = 105/123 (85%)
Frame = -2
Query: 635 QKIRLPKGFLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADR 456
++ R P+ G E+ GIHETTYNSIMKCDV+IRKDLYA GG+TMYPGIADR
Sbjct: 253 ERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADR 312
Query: 455 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 276
MQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 313 MQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 372
Query: 275 KCF 267
KCF
Sbjct: 373 KCF 375
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 637 NKRFGCPKAFFQPWFLGMKLA 575
N+RF CP+A FQP FLGM+ A
Sbjct: 252 NERFRCPEAMFQPSFLGMESA 272
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 212 bits (517), Expect = 2e-55
Identities = 98/123 (79%), Positives = 105/123 (85%)
Frame = -2
Query: 635 QKIRLPKGFLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADR 456
++ R P+ G E+ GIHETTYNSIMKCDV+IRKDLYA GG+TMYPGIADR
Sbjct: 254 ERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADR 313
Query: 455 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 276
MQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 373
Query: 275 KCF 267
KCF
Sbjct: 374 KCF 376
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 637 NKRFGCPKAFFQPWFLGMKLA 575
N+RF CP+A FQP FLGM+ A
Sbjct: 253 NERFRCPEAMFQPSFLGMESA 273
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 210 bits (513), Expect = 7e-55
Identities = 97/123 (78%), Positives = 105/123 (85%)
Frame = -2
Query: 635 QKIRLPKGFLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADR 456
++ R P+ G E+ GIHETTYNSIMKCDV+IRKDLYA GG+TM+PGIADR
Sbjct: 253 ERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADR 312
Query: 455 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 276
MQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 313 MQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 372
Query: 275 KCF 267
KCF
Sbjct: 373 KCF 375
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 637 NKRFGCPKAFFQPWFLGMKLA 575
N+RF CP+A FQP FLGM+ A
Sbjct: 252 NERFRCPEAMFQPSFLGMESA 272
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 185 bits (450), Expect = 3e-47
Identities = 84/123 (68%), Positives = 97/123 (78%)
Frame = -2
Query: 635 QKIRLPKGFLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADR 456
++ R P+ G EA GIHE YN IMKCDV+IRKDLY+ GG+TM+PGIADR
Sbjct: 27 ERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTMFPGIADR 86
Query: 455 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 276
MQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E GP IVHR
Sbjct: 87 MQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHR 146
Query: 275 KCF 267
KCF
Sbjct: 147 KCF 149
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 637 NKRFGCPKAFFQPWFLGMK 581
N+RF CP+A FQP FLGM+
Sbjct: 26 NERFRCPEAMFQPAFLGME 44
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 62.9 bits (146), Expect = 2e-10
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Frame = -2
Query: 572 IHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADRMQKEITA-------------- 435
+ E N I C +++R+ LY GG+TM+ R+Q++I
Sbjct: 223 LSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSG 282
Query: 434 --LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*T 261
+ P ++ ++I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F
Sbjct: 283 GRIKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-L 341
Query: 260 HR 255
HR
Sbjct: 342 HR 343
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = -2
Query: 590 GYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADRMQKEITALAPSTMKI 411
G A G+ + S+ D++IR L+ + GG T+ G +R+ +E+ + P +M++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 410 KIIA---PPERKYSVWIGGSILASL 345
K+I+ E++++ WIGGSILASL
Sbjct: 206 KLISNNSSVEKRFNPWIGGSILASL 230
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 53.2 bits (122), Expect = 2e-07
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 29/143 (20%)
Frame = -2
Query: 635 QKIRLPKGFLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADR 456
++ P+ + E G+ E +N+I D++ R + Y GG+TMYPG+ R
Sbjct: 257 ERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSR 316
Query: 455 MQKEITAL---------------------APST-----MKIKI-IAPP-ERKYSVWIGGS 360
+++EI L P T K KI I P RK+ V++GG+
Sbjct: 317 LEREIKQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGA 376
Query: 359 ILAS-LSTFQQMWISKQEYDESG 294
+LA + W++++EY+E G
Sbjct: 377 VLADIMKDKDSFWMTRKEYEEKG 399
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Frame = -2
Query: 554 NSIMKCDVNIRKDLYATPYCPGGTTMYPGIADRMQKEITALAPS--------TMKIKIIA 399
+S++ C ++ RK L GGT M PG R+ +EI L S +K+
Sbjct: 64 DSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQ 123
Query: 398 PP-ERKYSVWIGGSILASLSTFQQMWISKQEYDE 300
PP + W+GG+I SL +++ Y +
Sbjct: 124 PPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -2
Query: 611 FLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLY 510
F P+L+ G + GIHE+ + SI KCD+++R +L+
Sbjct: 2307 FQPSLL-GRDIDGIHESIFKSIKKCDIDLRAELF 2339
>SB_38989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 552 LHHEVRREHP*GLVRNTVLSGWYHHVPWNRRPYAKGNHSS 433
+HH E P N V +YH W++ PY +G +SS
Sbjct: 3 VHHSRTPEEPRPASDNLVNYVYYH---WSKHPYVRGGYSS 39
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 385 STPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSAS 266
STP +V PP PSN + ++ S +P T S S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256
>SB_665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 247 QRRRCV*KHFLCTMEGPDSSYSCFEIHICWKVEREARIDPPIHTEY 384
+++RC + F CT+E P + + + CWKV PI T++
Sbjct: 23 KKQRCYDRDFCCTVERP-GLLTIPDDYTCWKVGPMWPFWSPIPTQF 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,959,441
Number of Sequences: 59808
Number of extensions: 464216
Number of successful extensions: 1988
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1985
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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