Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0251
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             182   2e-48
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   4.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   7.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  182 bits (444), Expect = 2e-48
 Identities = 85/106 (80%), Positives = 90/106 (84%)
 Frame = -2

Query: 635 QKIRLPKGFLPTLVFGYEACGIHETTYNSIMKCDVNIRKDLYATPYCPGGTTMYPGIADR 456
           ++ R P+        G EACGIHETTYNSIMKCDV+IRKDLYA     GGTTMYPGIADR
Sbjct: 28  ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 87

Query: 455 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 318
           MQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 88  MQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 33.9 bits (74), Expect = 0.001
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -3

Query: 637 NKRFGCPKAFFQPWFLGMK 581
           N+RF CP+A FQP FLGM+
Sbjct: 27  NERFRCPEALFQPSFLGME 45


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 519 GLVRNTVLSGWYHHVPWNRR 460
           GLV N+ +  W  H P  R+
Sbjct: 321 GLVNNSAIGCWNEHQPLQRQ 340


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 504 CCVQVLTDVHVALHDGVI 557
           C  Q+L  VH   H+GV+
Sbjct: 14  CIQQILESVHHCHHNGVV 31


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 622 CPKAFFQPWFL 590
           C KAF +PW L
Sbjct: 48  CGKAFSRPWLL 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,545
Number of Sequences: 438
Number of extensions: 4329
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)