Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0250
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    68   5e-13
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    29   0.20 
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    27   0.80 
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   4.3  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 68.1 bits (159), Expect = 5e-13
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = +1

Query: 85  PEGQNDLRRMQLRELAQLNGTLREHDAARCANCSATDHKTWLCPDKPNVTSAIVC 249
           PEGQNDL+R QLR+LA LNGTLR+ +   C NC    H+ + CP++ N T  IVC
Sbjct: 282 PEGQNDLKRNQLRQLATLNGTLRDDENQVCQNCGNVGHRRFDCPERINHTMNIVC 336


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 306 HHQPDKAKYR*GVHVADGMRWESPGSPL 389
           H +P    Y  G+HV D  R   PGSPL
Sbjct: 633 HIRPTSTGYHVGIHVTDVSRVIEPGSPL 660


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +1

Query: 70  GGRGSPEGQNDLRRMQLRELAQLNGTLREHDAARCANCSATDHKTWLCPDKPNVTSA 240
           GGR S EG   +R  +L   A       ++    C NC A  HK   C ++P    A
Sbjct: 85  GGRSSIEGSWYVRGKKLGPAAT------KYRKGACENCGAMSHKVKDCMERPRKRGA 135


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 109  RMQLRELAQLNGTLREHDAARCANCSATDH-KT-WLCP 216
            R   +E   LNG  R+    +C+NC    H KT  +CP
Sbjct: 926  RHAAKEGINLNGEGRKPTTRKCSNCGQVGHMKTNKICP 963


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 981,491
Number of Sequences: 5004
Number of extensions: 12088
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)