Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0250
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 36 0.009
02_05_0567 + 30029862-30030136,30030299-30030384,30031663-300318... 36 0.009
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 32 0.15
03_06_0443 + 33973229-33973311,33973422-33973510,33974873-339750... 32 0.15
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 31 0.25
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 31 0.44
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 30 0.59
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044... 30 0.59
05_05_0237 - 23526613-23527178,23527979-23528066,23528384-235285... 29 1.4
03_06_0531 + 34552206-34552598,34552665-34552735,34553363-345533... 28 2.4
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 28 3.1
07_03_1598 + 28019788-28019834,28020404-28021289 27 5.5
09_02_0108 - 4358051-4358645,4358722-4359137,4360307-4360903,436... 26 9.6
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139... 26 9.6
06_03_0136 + 17056256-17056420,17056864-17057036,17057272-170572... 26 9.6
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 26 9.6
03_01_0618 + 4543013-4543111,4544100-4544177,4544739-4544873,454... 26 9.6
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 36.3 bits (80), Expect = 0.009
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 97 NDLRRMQLRELAQLNGTLREHDAARCANCSATDHK 201
N+ +R QLRELA LN T+R+ + C NC H+
Sbjct: 194 NEHKRQQLRELAALNATIRDDEC--CRNCGEPGHR 226
>02_05_0567 +
30029862-30030136,30030299-30030384,30031663-30031811,
30032581-30032685,30032779-30032895,30033251-30033394,
30033519-30033668
Length = 341
Score = 36.3 bits (80), Expect = 0.009
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1
Query: 88 EGQNDLRRMQLRELAQLNGTLREHDAARCANCS 186
E Q+ ++ QLRELA LNGTLRE R + S
Sbjct: 294 ESQDFFKKQQLRELAMLNGTLREEGMQRSGSAS 326
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 88 EGQNDLRRMQLRELAQLNGTLRE 156
E Q+ +R QLRELA LN TLRE
Sbjct: 307 ESQDYYKRQQLRELAMLNSTLRE 329
>03_06_0443 +
33973229-33973311,33973422-33973510,33974873-33975024,
33975463-33975579,33975729-33975776,33976169-33976312,
33976715-33976858
Length = 258
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 88 EGQNDLRRMQLRELAQLNGTLRE 156
E Q+ +R QLRELA LN TLRE
Sbjct: 213 ESQDFYKRQQLRELAMLNSTLRE 235
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 31.5 bits (68), Expect = 0.25
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 88 EGQNDLRRMQLRELAQLNGTLRE 156
E Q+ L+R QLRELA LN T RE
Sbjct: 247 ESQDFLKRQQLRELAVLNSTYRE 269
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 30.7 bits (66), Expect = 0.44
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 92 PSGDPRPPNSCSPGDPLVLERPPP 21
PS P PP +P P+V+ PPP
Sbjct: 49 PSSKPPPPTQTAPPVPVVISEPPP 72
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 88 EGQNDLRRMQLRELAQLNGTLRE 156
E + ++ QLRELA LNGTLRE
Sbjct: 246 ESMDYYKKQQLRELAILNGTLRE 268
>01_06_1593 +
38502884-38502993,38503580-38503665,38504352-38504497,
38504817-38504933,38505028-38505144,38505858-38506001,
38506099-38506251
Length = 290
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 88 EGQNDLRRMQLRELAQLNGTLRE 156
E + ++ QLRELA LNGTLRE
Sbjct: 242 ESMDYYKKQQLRELAILNGTLRE 264
>05_05_0237 -
23526613-23527178,23527979-23528066,23528384-23528527,
23528674-23528790,23528860-23528970,23530911-23531062,
23531362-23531450,23531664-23531761
Length = 454
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 88 EGQNDLRRMQLRELAQLNGTLRE 156
E Q+ +R QLRELA LN LRE
Sbjct: 239 ESQDYYKRQQLRELALLNSPLRE 261
>03_06_0531 +
34552206-34552598,34552665-34552735,34553363-34553369,
34553603-34553736,34553834-34554245,34554655-34554753,
34555059-34555283,34555652-34556029,34556412-34556555,
34556832-34556927,34557228-34557547,34557965-34558040
Length = 784
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +1
Query: 67 FGGRGSPEGQNDLRRMQLRELAQLNGTLREHDAARCANCSATDHKTWLCPDK 222
FGGRGS G R + + + C NC + H+ CP+K
Sbjct: 733 FGGRGSSYGSRSSSSFGGRSSSFGSRDSSRSFSGACFNCGESGHRASDCPNK 784
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 67 FGGRGSPEGQNDLRRMQLRELAQLNGTLREHDA----ARCANCSATDHKTWLCPDKP 225
F SP + +LRR ELAQ+ T + + A + SATD T L P P
Sbjct: 57 FSLSSSPAARRELRRRLTAELAQVRATCKRLSSLPAPAPSSALSATDPSTPLPPHPP 113
>07_03_1598 + 28019788-28019834,28020404-28021289
Length = 310
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 100 DLRRMQLRELAQLNGT-LREHDAARCANCSATD 195
++RRM RE+ +L GT L D AR A A+D
Sbjct: 248 EVRRMVTREMQELEGTSLEVEDVARAAVFLASD 280
>09_02_0108 -
4358051-4358645,4358722-4359137,4360307-4360903,
4361068-4361139,4361236-4361370,4361485-4361585,
4362719-4362863
Length = 686
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +1
Query: 133 QLNGTLREHDAARCANCSATDHKTWLCPDKPNV 231
+L +R + C+ C + DH CP K V
Sbjct: 643 RLIDVIRSKGSVTCSGCGSHDHNIRTCPKKREV 675
>06_03_1516 +
30712208-30712780,30712984-30713139,30713819-30713985,
30714108-30714357,30714400-30715182,30715437-30715753,
30715775-30716036
Length = 835
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 109 RMQLRELAQLNGTLREHDAARCANCSATDHKTWLCPDK 222
R++ E+A R+ RCA+C DH+ C +K
Sbjct: 282 RLRFPEIAAGKAPARDQ-GVRCASCHKLDHRALACWNK 318
>06_03_0136 +
17056256-17056420,17056864-17057036,17057272-17057297,
17057524-17057922,17058190-17058265,17058432-17058507,
17058930-17059013,17059446-17059570,17060146-17060389,
17060968-17061031,17061218-17061726
Length = 646
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 154 EHDAARCANCSATDHKTWLCPDKPNVTSAI 243
+ D +RC NC + H CP KP +AI
Sbjct: 378 DKDDSRCFNCGSYSHALKECP-KPRDNAAI 406
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 169 RCANCSATDHKTWLCPDK 222
RC C A DH +CP+K
Sbjct: 71 RCFICKAADHVAKVCPEK 88
>03_01_0618 +
4543013-4543111,4544100-4544177,4544739-4544873,
4544971-4545078,4545397-4545525,4546191-4546306,
4546392-4546509,4547274-4547379,4547492-4547631,
4547735-4547905,4547984-4548094,4548206-4548317,
4548615-4548943,4549064-4549154,4549542-4549637,
4549710-4549780,4549868-4549980,4550353-4550434
Length = 734
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 130 AQLNGTLREHDAARCANC 183
A +GTLR+HD C++C
Sbjct: 152 ASEDGTLRQHDFRECSSC 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,049,761
Number of Sequences: 37544
Number of extensions: 124157
Number of successful extensions: 664
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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