Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0250
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    27   0.059
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   9.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 27.5 bits (58), Expect = 0.059
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 80  PRPPNSCSPGDPLVLERPPPRSE 12
           PR P    PGD  + +RP PRS+
Sbjct: 913 PRSPGRAWPGDSDIRQRPIPRSD 935


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 282 DCRARRPGHHQPDKAKYR*GVHVADGMRWESPGSPLL 392
           +C+  R  HH    +    G  +AD    ES  S LL
Sbjct: 404 NCKINRKVHHTTSSSSAAGGEGLADRRGSESSDSVLL 440


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 53  GDPLVLERPPPRSE 12
           G+PL L RP  R E
Sbjct: 473 GEPLGLRRPQEREE 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,780
Number of Sequences: 438
Number of extensions: 1138
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)