Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0250
(397 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51300.2 68418.m06360 splicing factor-related contains simila... 45 2e-05
At5g51300.1 68418.m06359 splicing factor-related contains simila... 45 2e-05
At3g08620.1 68416.m01001 KH domain-containing protein 31 0.28
At1g09660.1 68414.m01084 KH domain-containing quaking protein, p... 31 0.28
At5g56140.1 68418.m07003 KH domain-containing protein 30 0.49
At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus... 29 1.5
At1g29540.1 68414.m03613 hypothetical protein 28 2.6
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 27 6.0
At2g38610.2 68415.m04743 KH domain-containing protein 26 7.9
At2g38610.1 68415.m04742 KH domain-containing protein 26 7.9
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 26 7.9
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 26 7.9
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 97 NDLRRMQLRELAQLNGTLREHDAARCANCSATDHKTWLCPDKPNV-TSAIVC 249
N+ +R QLRELA LNGT+R+ + C C H+ + CP + N S ++C
Sbjct: 340 NEHKRQQLRELATLNGTIRDEEF--CRLCGEPGHRQYACPSRTNTFKSDVLC 389
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 97 NDLRRMQLRELAQLNGTLREHDAARCANCSATDHKTWLCPDKPNV-TSAIVC 249
N+ +R QLRELA LNGT+R+ + C C H+ + CP + N S ++C
Sbjct: 340 NEHKRQQLRELATLNGTIRDEEF--CRLCGEPGHRQYACPSRTNTFKSDVLC 389
>At3g08620.1 68416.m01001 KH domain-containing protein
Length = 283
Score = 31.1 bits (67), Expect = 0.28
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 88 EGQNDLRRMQLRELAQLNGTLREH 159
E Q+ ++R QLRELA LN LRE+
Sbjct: 237 ESQDYIKRQQLRELALLNSNLREN 260
>At1g09660.1 68414.m01084 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 298
Score = 31.1 bits (67), Expect = 0.28
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 88 EGQNDLRRMQLRELAQLNGTLRE 156
E + +R QL+ELA LNGTLRE
Sbjct: 249 ESMDHYKREQLKELAALNGTLRE 271
>At5g56140.1 68418.m07003 KH domain-containing protein
Length = 315
Score = 30.3 bits (65), Expect = 0.49
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 106 RRMQLRELAQLNGTLREHDAARCANCS 186
++ QLRELA LNGTLRE + + S
Sbjct: 274 KKQQLRELALLNGTLREEGSPMSGSVS 300
>At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus
musculus
Length = 555
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 106 RRMQLRELAQLNGTLREHDAARCANCS 186
++ QLRELA LNG+LRE + + S
Sbjct: 515 KKQQLRELALLNGSLREEGSPMSGSIS 541
>At1g29540.1 68414.m03613 hypothetical protein
Length = 161
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 94 QNDLRRMQLRELAQLNGTLREHDAARCANCSATDHKTWLCPDK 222
QN + +L EL +G + E A+ + +WLCP K
Sbjct: 97 QNKEKMKRLNELRSFSGAVGERKASNPESRKKVFPSSWLCPGK 139
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 92 PSGDPRPPNSCS-PGDPLVLERPPPRS 15
P+ +P PP S S P P+ + PP S
Sbjct: 147 PNSNPNPPESSSNPNPPVTVPNPPESS 173
>At2g38610.2 68415.m04743 KH domain-containing protein
Length = 286
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 88 EGQNDLRRMQLRELAQLN-GTLRE 156
E Q+ ++R QLRELA LN LRE
Sbjct: 238 ESQDFIKRQQLRELALLNSNNLRE 261
>At2g38610.1 68415.m04742 KH domain-containing protein
Length = 286
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 88 EGQNDLRRMQLRELAQLN-GTLRE 156
E Q+ ++R QLRELA LN LRE
Sbjct: 238 ESQDFIKRQQLRELALLNSNNLRE 261
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 92 PSGDPRPPNSCSPGDPLVLERPPPRSE 12
P P P ++ SP P V E PPP ++
Sbjct: 106 PIDSPPPESTNSPPPPEVFEPPPPPAD 132
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 80 PRPPNSCSPGDPLVLERPPP 21
P PP S SP P V PPP
Sbjct: 458 PPPPPSPSPPPPYVYSSPPP 477
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,681,250
Number of Sequences: 28952
Number of extensions: 79884
Number of successful extensions: 460
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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