Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0249
         (510 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    25   0.30 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.39 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   2.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.4  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   8.4  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 288 TVTIA-FIKRIYVSLLKKSLSNTYYYI*HLSLTLTSTHIIPIMSYGGKNSLKRLYG 452
           TV +A + +R Y    +K LS  Y++I HLS+    T  + ++     +   R YG
Sbjct: 55  TVLLALWTRRRYAG--RKKLSRMYFFILHLSIADLITAFLSVLPQLAWDITYRFYG 108


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 484 SQNLFYLNFAIPYKRFKLFFPPYDMIG 404
           S  LFY      YK+ K  FPP  + G
Sbjct: 275 STRLFYYQLTDLYKKIKKAFPPLSLHG 301


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 31  YYSKYDNLRI*QEK*NNVMYSEKQL*ISF 117
           YYS+Y  +R   E  N++  SE+Q+ I F
Sbjct: 176 YYSRYITIRRKAELANSLGLSERQVKIWF 204


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 102 LFFTVHNIISFFLLNA*VIIFR 37
           +FFTV N++  +L +  V++ +
Sbjct: 528 VFFTVFNVVHCYLASELVLMLK 549



 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 99   FFTVHNIISFFL 64
            F T+HN+I  FL
Sbjct: 1232 FVTIHNVIGQFL 1243


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 499 FKWNESQNLFYLNFAIPYKRFKL 431
           +KWNE  N   ++  +   +FK+
Sbjct: 197 YKWNEGPNSVGVSSEVSLPQFKV 219


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,032
Number of Sequences: 336
Number of extensions: 2274
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)