Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0249
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    26   3.8  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   5.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   8.7  

>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 5   TVDILTLKGITLNMITYAFNKKNEIMLCT---VKNNYKFLLMKFQLVWKFIQ 151
           +VD  T  G+    +  + N KN   LCT     NNYK   ++   VWKF++
Sbjct: 104 SVDPTTPTGVCA--VVLSNNNKNR-SLCTNLGAANNYKLKDLQQPNVWKFVE 152


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 56  AFNKKNEIMLCTVKNNYKFLLMKFQLVWKFIQLFNKL 166
           A+NK    +   + N+Y+FL +  Q + K+ +  NKL
Sbjct: 68  AYNK----LYAKIANDYEFLRLHLQSITKYDEFMNKL 100


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 505  FLFKWNESQNLFYLNFAIPYKRFKLFF 425
            F   W++ QN   L+  +PY +F L F
Sbjct: 1179 FRLYWSDEQNDPDLSAVLPYNKFVLLF 1205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,815
Number of Sequences: 5004
Number of extensions: 33751
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)