Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0249
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_13661| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_29917| Best HMM Match : Chlorovi_GP_rpt (HMM E-Value=2.6)           28   5.1  

>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 14  ILTLKGITLNMITYAFNKKNEIMLCTVKNNYKFLLMKFQLVW 139
           I T  GI L + T  FN+KN ++ C +  +   LL  F   +
Sbjct: 121 IYTFSGIILGLFTGTFNRKNILVFCLLLWSGMTLLTGFSTTY 162


>SB_13661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 337 FFKSDTYMRFIKAIVTVLAVLRF 269
           F   DT++ +I AI TV+A++RF
Sbjct: 27  FLGVDTFVHYIVAIYTVIAIIRF 49


>SB_29917| Best HMM Match : Chlorovi_GP_rpt (HMM E-Value=2.6)
          Length = 360

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 2   LTVDILTLKGITLNMITYA-FNKKNEIMLCTVKNNYKFL 115
           +T D+ TL G  +  +  A  N+KN  +L  + +N KFL
Sbjct: 145 MTPDLKTLSGDLIGQLLSATVNEKNSTLLTALSSNVKFL 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,934
Number of Sequences: 59808
Number of extensions: 219459
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)