Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0249
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 484 SQNLFYLNFAIPYKRFKLFFPPYDMIG 404
           S  LFY      YK+ K   PP  + G
Sbjct: 279 STRLFYYQLTDLYKKIKKAVPPLSLHG 305


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 293 NYRFYKAHIRIAFK 334
           NYR +KA+++ A K
Sbjct: 518 NYRIFKANVKEAVK 531


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 8   VDILTLKGITLNMITYAFNKKNEIM 82
           V I  LKGI L  +T A   + E+M
Sbjct: 286 VKISALKGINLRELTEAIIVQAELM 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,329
Number of Sequences: 438
Number of extensions: 2866
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)