Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0248
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 160 2e-40
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 156 3e-39
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 82 8e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 60 4e-10
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 34 0.021
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.048
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 7.3
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 160 bits (388), Expect = 2e-40
Identities = 73/84 (86%), Positives = 77/84 (91%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSITASLRF G+L
Sbjct: 193 LTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSL 252
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
NVDL EFQTNLVPYPRIHFPLVTY
Sbjct: 253 NVDLNEFQTNLVPYPRIHFPLVTY 276
Score = 122 bits (294), Expect = 5e-29
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
ARGHYT+GKE++D VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGK
Sbjct: 108 ARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGK 167
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
KS L+F++YPAPQVST+VVEPYN
Sbjct: 168 KSNLQFSVYPAPQVSTSVVEPYN 190
Score = 79.8 bits (188), Expect = 3e-16
Identities = 38/64 (59%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Frame = +3
Query: 474 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCML 644
L PYP P P++SA KA+HE SV EITN CFEP NQMVK DPR G+YM C+L
Sbjct: 263 LVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLL 322
Query: 645 DRGD 656
RGD
Sbjct: 323 YRGD 326
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 156 bits (378), Expect = 3e-39
Identities = 70/84 (83%), Positives = 77/84 (91%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+L
Sbjct: 189 LTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSL 248
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
NVDL EFQTNLVPYPRIHFPLVTY
Sbjct: 249 NVDLAEFQTNLVPYPRIHFPLVTY 272
Score = 120 bits (288), Expect = 2e-28
Identities = 52/83 (62%), Positives = 67/83 (80%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
ARGHYT+GKE+VD V D+IR++AD C+GLQGFL+FH LL+ERL+++Y K
Sbjct: 104 ARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTK 163
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
KSKL+F++YPAPQVST+VVEPYN
Sbjct: 164 KSKLQFSVYPAPQVSTSVVEPYN 186
Score = 79.8 bits (188), Expect = 3e-16
Identities = 38/64 (59%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Frame = +3
Query: 474 LPPYP---LPTGHVRPVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCML 644
L PYP P P++SA KA+HE SV EITN CFEP NQMVK DPR G+YM C+L
Sbjct: 259 LVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLL 318
Query: 645 DRGD 656
RGD
Sbjct: 319 YRGD 322
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 81.8 bits (193), Expect = 8e-17
Identities = 35/84 (41%), Positives = 54/84 (64%)
Frame = +1
Query: 256 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 435
L+ H +E+SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T S RF G L
Sbjct: 187 LSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGEL 246
Query: 436 NVDLTEFQTNLVPYPRIHFPLVTY 507
N DL + N+VP+PR+HF +V +
Sbjct: 247 NSDLRKLAVNMVPFPRLHFFMVGF 270
Score = 71.7 bits (168), Expect = 8e-14
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +2
Query: 2 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 181
A+GHYT G E+ D VLD +R+ A+ C LQGF + H LL+ ++ +Y
Sbjct: 102 AKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPD 161
Query: 182 KSKLEFAIYPAPQVSTAVVEPYN 250
+ F++ PAP+ S VVEPYN
Sbjct: 162 RMMATFSVAPAPKSSDTVVEPYN 184
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 510 PVISAEKAYHEQLSVAEITNACFEPANQMVKSDPRHGKYMGCCMLDRG 653
P+ + + + +SV E+T F+ N MV +DPRHG+Y+ L RG
Sbjct: 272 PLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRG 319
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 59.7 bits (138), Expect = 4e-10
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = +1
Query: 280 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 459
++D ++DN A+ I L + PT+ N+L+ ++S+ T +LR+ G +N DL
Sbjct: 198 NADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSII 257
Query: 460 TNLVPYPRIHFPLVTY 507
+L+P PR HF L +Y
Sbjct: 258 ASLIPSPRCHFLLTSY 273
Score = 46.8 bits (106), Expect = 3e-06
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +2
Query: 14 YTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKL 193
Y+ + I + ++D I + AD L+GF + H L+ERL+ Y KK
Sbjct: 108 YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQ 167
Query: 194 EFAIYPAPQ-VSTAVVEPYN 250
++++P Q VS VV+PYN
Sbjct: 168 TYSVFPNSQSVSDVVVQPYN 187
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -3
Query: 474 RHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 313
R + E + H ++ + Q+SSD ++ +D T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.048
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 469 VPYPRIHFPLVTYGQSSLPRRPTMNSFPSPRSQTHASSPPTR 594
VP P P V+ +SS+P P N+ PSP S + AS+ P R
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 511 QSSLPRRPTMNSFPSPRSQTHASSPPTR 594
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -3
Query: 468 QVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDGFIVDHE 295
Q ++ VH ++A E R N + QVG +N ++ D+ + F+ D+E
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYE 658
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,426
Number of Sequences: 5004
Number of extensions: 55557
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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