Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0248
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 443 TSPSSRLTWCLTPVSTSHWSRTAS 514
           TSP+S +  C++P++ S  S + S
Sbjct: 582 TSPNSAVRKCMSPINGSGASGSGS 605


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
 Frame = +1

Query: 238 RALQLYLTTHTTLEHSDCAFMVDNEAIYDICRR-NLDIERPTYTNLNRLIGQIVSSITAS 414
           RAL+   +  T+++ +   F +    +Y  C+R  +++ R   T  +      ++    +
Sbjct: 527 RALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSE---DAMTEALEA 583

Query: 415 LRFDGALNVDLTEFQTNLVPYPRIH--FPLVTYGQSSLPRRPTMNSFP----SPRSQTHA 576
           +R  G ++++      NL PY  ++  F    Y + ++       S P    SP SQ H+
Sbjct: 584 VRL-GHMSINQAAIHYNL-PYSSLYGRFKRGKYEEPTVGEISQDGSSPHFHQSP-SQNHS 640

Query: 577 SSPP 588
           S+ P
Sbjct: 641 SAVP 644


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 54  ESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WS 158
           +S SS   V   ++S SS+PS+++   G L   WS
Sbjct: 357 QSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWS 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,864
Number of Sequences: 438
Number of extensions: 3933
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)